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Open data
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Basic information
Entry | Database: PDB / ID: 1fkk | ||||||
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Title | ATOMIC STRUCTURE OF FKBP12, AN IMMUNOPHILIN BINDING PROTEIN | ||||||
![]() | FK506 BINDING PROTEIN | ||||||
![]() | ROTAMASE / FK506 BINDING PROTEIN / FKBP12 / CIS-TRANS PROLYL-ISOMERASE | ||||||
Function / homology | ![]() mTORC1-mediated signalling / TGF-beta receptor signaling activates SMADs / regulation of activin receptor signaling pathway / Calcineurin activates NFAT / cytoplasmic side of membrane / activin binding / heart trabecula formation / ryanodine receptor complex / negative regulation of release of sequestered calcium ion into cytosol / regulation of amyloid precursor protein catabolic process ...mTORC1-mediated signalling / TGF-beta receptor signaling activates SMADs / regulation of activin receptor signaling pathway / Calcineurin activates NFAT / cytoplasmic side of membrane / activin binding / heart trabecula formation / ryanodine receptor complex / negative regulation of release of sequestered calcium ion into cytosol / regulation of amyloid precursor protein catabolic process / response to caffeine / ventricular cardiac muscle tissue morphogenesis / negative regulation of phosphoprotein phosphatase activity / FK506 binding / SMAD binding / negative regulation of ryanodine-sensitive calcium-release channel activity / regulation of immune response / calcium channel inhibitor activity / protein peptidyl-prolyl isomerization / T cell proliferation / heart morphogenesis / supramolecular fiber organization / release of sequestered calcium ion into cytosol / regulation of ryanodine-sensitive calcium-release channel activity / sarcoplasmic reticulum membrane / muscle contraction / T cell activation / negative regulation of protein phosphorylation / sarcoplasmic reticulum / peptidylprolyl isomerase / positive regulation of protein ubiquitination / peptidyl-prolyl cis-trans isomerase activity / cytokine-mediated signaling pathway / Z disc / regulation of protein localization / positive regulation of protein binding / positive regulation of canonical NF-kappaB signal transduction / transmembrane transporter binding / amyloid fibril formation / protein homodimerization activity / extracellular exosome / membrane / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Wilson, K.P. / Sintchak, M.D. / Thomson, J.A. / Navia, M.A. | ||||||
![]() | ![]() Title: Comparative X-ray structures of the major binding protein for the immunosuppressant FK506 (tacrolimus) in unliganded form and in complex with FK506 and rapamycin. Authors: Wilson, K.P. / Yamashita, M.M. / Sintchak, M.D. / Rotstein, S.H. / Murcko, M.A. / Boger, J. / Thomson, J.A. / Fitzgibbon, M.J. / Black, J.R. / Navia, M.A. #1: ![]() Title: X-Ray Structure of Calcineurin Inhibited by the Immunophilin-Immunosuppressant Fkbp12-Fk506 Complex Authors: Griffith, J.P. / Kim, J.L. / Kim, E.E. / Sintchak, M.D. / Thomson, J.A. / Fitzgibbon, M.J. / Fleming, M.A. / Caron, P.R. / Hsiao, K. / Navia, M.A. #2: ![]() Title: Improved Calcineurin Inhibition by Yeast Fkbp12-Drug Complexes Authors: Rotonda, J. / Burbaum, J.J. / Chan, H.K. / Marcy, A.I. / Becker, J.W. #3: ![]() Title: Fk-506-Binding Protein: Three-Dimensional Structure of the Complex with the Antagonist L-685,818 Authors: Becker, J.W. / Rotonda, J. / Mckeever, B.M. / Chan, H.K. / Marcy, A.I. / Wiederrecht, G. / Hermes, J.D. / Springer, J.P. #4: ![]() Title: Atomic Structures of Human Immunophilin Fkbp12 Complexes with Fk506 and Rapamycin Authors: Van Duyne, G.D. / Standaert, R.F. / Karplus, P.A. / Schreiber, S.L. / Clardy, J. #5: ![]() Title: Atomic Structure of the Rapamycin Human Immunophilin Fkbp-12 Complex Authors: Van Duyne, G.D. / Standaert, R.F. / Schreiber, S.L. / Clardy, J. #6: ![]() Title: Atomic Structure of Fkbp-Fk506, an Immunophilin-Immunosuppressant Complex Authors: Van Duyne, G.D. / Standaert, R.F. / Karplus, P.A. / Schreiber, S.L. / Clardy, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 34.6 KB | Display | ![]() |
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PDB format | ![]() | 23.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 380.4 KB | Display | ![]() |
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Full document | ![]() | 381.7 KB | Display | |
Data in XML | ![]() | 4.1 KB | Display | |
Data in CIF | ![]() | 5.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 11794.425 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: MR 12,000 DALTONS / Source: (natural) ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.49 Å3/Da / Density % sol: 50.61 % | ||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusion | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.54 |
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Detector | Detector: IMAGE PLATE |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54 Å / Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.3 Å / Num. obs: 3977 / % possible obs: 68 % / Num. measured all: 10574 / Rmerge(I) obs: 0.049 |
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Processing
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Refinement | Resolution: 2.2→7 Å / σ(F): 1 /
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Refinement step | Cycle: LAST / Resolution: 2.2→7 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.3 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_improper_angle_deg / Dev ideal: 1.9 |