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Open data
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Basic information
Entry | Database: PDB / ID: 1fjv | ||||||
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Title | THERMOLYSIN (60% ACETONITRILE SOAKED CRYSTALS) | ||||||
![]() | THERMOLYSIN | ||||||
![]() | HYDROLASE / METALLOPROTEINASE / ORGANIC SOLVENT | ||||||
Function / homology | ![]() thermolysin / metalloendopeptidase activity / proteolysis / extracellular region / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | English, A.C. / Groom, C.R. / Hubbard, R.E. | ||||||
![]() | ![]() Title: Experimental and computational mapping of the binding surface of a crystalline protein. Authors: English, A.C. / Groom, C.R. / Hubbard, R.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 79.2 KB | Display | ![]() |
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PDB format | ![]() | 59.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 375.5 KB | Display | ![]() |
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Full document | ![]() | 379.3 KB | Display | |
Data in XML | ![]() | 7.9 KB | Display | |
Data in CIF | ![]() | 12.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1fj3C ![]() 1fjoC ![]() 1fjqC ![]() 1fjtC ![]() 1fjuC ![]() 1fjwC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 34362.305 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||||
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#2: Chemical | ChemComp-ZN / | ||||
#3: Chemical | ChemComp-CA / #4: Chemical | ChemComp-DMS / | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.43 Å3/Da / Density % sol: 49.41 % | ||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 7.5 Details: 4.6MM THERMOLYSIN, 45% DMSO, 50MM TRIS-HCL, 2.5M CSCL, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: unknownDetails: English, A.C., (1999) Proteins Struct.Funct.Genet., 37, 628. | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: ![]() |
Detector | Type: MARRESEARCH / Detector: AREA DETECTOR / Date: Nov 5, 1998 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2→20 Å / Num. all: 203746 / Num. obs: 24354 / % possible obs: 96 % / Observed criterion σ(I): 2 / Redundancy: 8.4 % / Biso Wilson estimate: 22 Å2 / Rmerge(I) obs: 0.103 / Net I/σ(I): 5.7 |
Reflection shell | Resolution: 2→2.06 Å / Redundancy: 8.5 % / Rmerge(I) obs: 0.422 / Mean I/σ(I) obs: 1.8 / Num. unique all: 3391 / % possible all: 94 |
Reflection shell | *PLUS % possible obs: 94 % |
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Processing
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Refinement | Method to determine structure: isomorphous replacement / Resolution: 2→20 Å / σ(I): 2 / Stereochemistry target values: Engh & Huber Details: maximum likelihood procedure used At this concentration (60% acetonitrile) there are no features in the electron density maps that could be interpreted as being due to acetonitrile or the dipeptide.
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Refinement step | Cycle: LAST / Resolution: 2→20 Å
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Refine LS restraints |
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Software | *PLUS Name: REFMAC / Classification: refinement | ||||||||||||||||||||
Refine LS restraints | *PLUS
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