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Yorodumi- PDB-1ews: THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE RABBIT KIDNEY DEF... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ews | ||||||
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Title | THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE RABBIT KIDNEY DEFENSIN, RK-1 | ||||||
Components | RK-1 DEFENSIN | ||||||
Keywords | ANTIMICROBIAL PROTEIN / alpha defensin / triple-stranded beta-sheet | ||||||
Function / homology | RK-1-like defensin / RK-1-like defensin / defense response to bacterium / extracellular region / Corticostatin-related peptide RK-1 Function and homology information | ||||||
Biological species | Oryctolagus cuniculus (rabbit) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | McManus, A.M. / Dawson, N.F. / Wade, J.D. / Craik, D.J. | ||||||
Citation | Journal: Biochemistry / Year: 2000 Title: Three-dimensional structure of RK-1: a novel alpha-defensin peptide. Authors: McManus, A.M. / Dawson, N.F. / Wade, J.D. / Carrington, L.E. / Winzor, D.J. / Craik, D.J. #1: Journal: J.PEPT.SCI. / Year: 2000 Title: Chemical Synthesis, Characterization and Activity of RK-1, a Novel Alpha-Defensin-Related Peptide Authors: Dawson, N.F. / Craik, D.J. / McManus, A.M. / Dashper, S.G. / Reynolds, E.G. / Tregear, G.W. / Otvos, L. / Wade, J.D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ews.cif.gz | 200.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ews.ent.gz | 170.7 KB | Display | PDB format |
PDBx/mmJSON format | 1ews.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ew/1ews ftp://data.pdbj.org/pub/pdb/validation_reports/ew/1ews | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3712.389 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Oryctolagus cuniculus (rabbit) / Organ: KIDNEY / References: UniProt: P81655 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: The structures are based on a total of 509 distance restraints consisting of 498 NOE-derived distance restraints, 11 restraints from hydrogen bonds and 31 dihedral angle restraints | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with acceptable covalent geometry Conformers calculated total number: 50 / Conformers submitted total number: 20 |