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- PDB-1e8e: Solution Structure of Methylophilus methylotrophus Cytochrome c''... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1e8e | ||||||
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Title | Solution Structure of Methylophilus methylotrophus Cytochrome c''. Insights into the Structural Basis of Haem-Ligand Detachment | ||||||
![]() | CYTOCHROME C'' | ||||||
![]() | OXIDOREDUCTASE(CYTOCHROME) / CYTOCHROME C'' / LIGAND DETACHMENT / REDOX-BOHR EFFECT / PARAMAGNETIC | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / TORSION ANGLE DYNAMICS WITH SIMULATED ANNEALING | ||||||
![]() | Brennan, L. / Turner, D.L. / Fareleira, P. / Santos, H. | ||||||
![]() | ![]() Title: Solution Structure of Methylophilus Methylotrophus Cytochrome C": Insights Into the Structural Basis of Haem-Ligand Detachment Authors: Brennan, L. / Turner, D.L. / Fareleira, P. / Santos, H. #1: Journal: Eur.J.Biochem. / Year: 1993 Title: Characterization of the Haem Environment in Methylophilus Methylotrophus Ferricytochrome C'' by 1H-NMR Authors: Costa, H.S. / Santos, H. / Turner, D.L. #2: Journal: Eur.J.Biochem. / Year: 1992 Title: Involvement of a Labile Axial Histidine in Coupling Electron and Proton Transfer in Methylophilus Methylotrophus Cytochrome C'' Authors: Costa, H.S. / Santos, H. / Turner, D.L. / Xavier, A.V. #3: ![]() Title: Characterization and NMR Studies of a Novel Cytochrome C Isolated from Methylophilus Methylotrophus which Shows a Redox-Linked Change Os Spin-State Authors: Santos, H. / Turner, D.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 772.3 KB | Display | ![]() |
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PDB format | ![]() | 668.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Data in XML | ![]() | 74.5 KB | Display | |
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Data in CIF | ![]() | 85.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 13699.490 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: C-TYPE CYTOCHROME, FULLY OXIDISED FORM / Source: (natural) ![]() |
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#2: Chemical | ChemComp-HEC / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 10 MM PHOSPATE BUFFER |
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Sample conditions | pH: 5.6 / Temperature: 298 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITYPLUS / Manufacturer: Varian / Model: UNITYPLUS / Field strength: 750 MHz |
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Processing
NMR software |
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Refinement | Method: TORSION ANGLE DYNAMICS WITH SIMULATED ANNEALING / Software ordinal: 1 Details: DIPOLAR SHIFTS WERE USED AS RESTRAINTS IN AN EXTENDED VERSION OF DYANA CALLED PARADYANA. D.L.TURNER,L,BRENNAN,S.G.CHAMBERLIN, R.O.LOURO,A.V.XAVIER (1998)DETERMINATION OF SOLUTION STRUCTURES ...Details: DIPOLAR SHIFTS WERE USED AS RESTRAINTS IN AN EXTENDED VERSION OF DYANA CALLED PARADYANA. D.L.TURNER,L,BRENNAN,S.G.CHAMBERLIN, R.O.LOURO,A.V.XAVIER (1998)DETERMINATION OF SOLUTION STRUCTURES OF PARAMAGNETIC PROTEINS BY NMR.EUR.BIOPHYS.J.27,367-375. | |||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers calculated total number: 400 / Conformers submitted total number: 20 |