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- PDB-1dlp: STRUCTURAL CHARACTERIZATION OF THE NATIVE FETUIN-BINDING PROTEIN ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1dlp | ||||||
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Title | STRUCTURAL CHARACTERIZATION OF THE NATIVE FETUIN-BINDING PROTEIN SCILLA CAMPANULATA AGGLUTININ (SCAFET): A NOVEL TWO-DOMAIN LECTIN | ||||||
![]() | LECTIN SCAFET PRECURSOR | ||||||
![]() | SUGAR BINDING PROTEIN / TWO-DOMAIN LECTIN / BETA PRISM II FOLD / NATIVE | ||||||
Function / homology | ![]() ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Wright, L.M. / Reynolds, C.D. / Rizkallah, P.J. / Allen, A.K. / VanDamme, E.J.M. / Donovan, M.J. / Peumans, W.J. | ||||||
![]() | ![]() Title: Structural characterisation of the native fetuin-binding protein Scilla campanulata agglutinin: a novel two-domain lectin. Authors: Wright, L.M. / Reynolds, C.D. / Rizkallah, P.J. / Allen, A.K. / Van Damme, E.J. / Donovan, M.J. / Peumans, W.J. #1: ![]() Title: Purification and Crystallisation of a Novel Two-Domain Lectin from Scilla Campanulata Authors: Wright, L.M. / Reynolds, C.D. / Rizkallah, P.J. / Allen, A.K. / Peumans, W.J. / Van Damme, E. / Donovan, M.J. #2: ![]() Title: Isolation, characterization, molecular cloning and molecular modelling of two lectins of different specificities from bluebell (Scilla campanulata) bulbs Authors: Wright, L.M. / Van Damme, E.J. / Barre, A. / Allen, A.K. / Van Leuven, F. / Reynolds, C.D. / Rouge, P. / Peumans, W.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 346.3 KB | Display | ![]() |
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PDB format | ![]() | 220.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 25545.377 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: PROTEIN WAS EXTRACTED FROM THE BULBS OF THIS PLANT Source: (natural) ![]() ![]() References: UniProt: Q9ZP48 #2: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.97 Å3/Da / Density % sol: 69.01 % |
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.8 Details: 70% Ammonium sulphate, Acetic Acid buffer, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K |
Crystal grow | *PLUS |
Components of the solutions | *PLUS Conc.: 70 %sat / Common name: ammonium sulfate |
-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 3.3→20 Å / Num. obs: 34139 / % possible obs: 95.3 % |
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Processing
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Refinement | Resolution: 3.3→20 Å / Stereochemistry target values: Engh & Huber / Details: Used weighted maximum likelihood procedure
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Refinement step | Cycle: LAST / Resolution: 3.3→20 Å
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