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- PDB-1dj3: STRUCTURES OF ADENYLOSUCCINATE SYNTHETASE FROM TRITICUM AESTIVUM ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1dj3 | ||||||
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Title | STRUCTURES OF ADENYLOSUCCINATE SYNTHETASE FROM TRITICUM AESTIVUM AND ARABIDOPSIS THALIANA | ||||||
![]() | ADENYLOSUCCINATE SYNTHETASE | ||||||
![]() | LIGASE / GDP | ||||||
Function / homology | ![]() adenylosuccinate synthase / adenylosuccinate synthase activity / IMP metabolic process / 'de novo' AMP biosynthetic process / chloroplast / GTP binding / metal ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Prade, L. / Cowan-Jacob, S.W. / Chemla, P. / Potter, S. / Ward, E. / Fonne-Pfister, R. | ||||||
![]() | ![]() Title: Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana. Authors: Prade, L. / Cowan-Jacob, S.W. / Chemla, P. / Potter, S. / Ward, E. / Fonne-Pfister, R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 172.4 KB | Display | ![]() |
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PDB format | ![]() | 138.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 509.4 KB | Display | ![]() |
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Full document | ![]() | 523.5 KB | Display | |
Data in XML | ![]() | 19.8 KB | Display | |
Data in CIF | ![]() | 28.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 47793.129 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.76 Å3/Da / Density % sol: 55.38 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 5.6 Details: PEG 4000, lithium sulfate, citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K | ||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 7 | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Nov 11, 1997 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 3→33 Å / Num. all: 20426 / Num. obs: 20426 / % possible obs: 84.1 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 3.1 % / Biso Wilson estimate: 14.7 Å2 / Rmerge(I) obs: 0.099 / Net I/σ(I): 11.4 |
Reflection shell | Resolution: 3→3.1 Å / Redundancy: 3.1 % / Rmerge(I) obs: 0.338 / % possible all: 98.4 |
Reflection | *PLUS |
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Processing
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Refinement | Resolution: 3→10 Å / σ(F): 2 / σ(I): 2 / Stereochemistry target values: Engh and Huber / Details: NCS restraints were set.
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Refinement step | Cycle: LAST / Resolution: 3→10 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||
Refinement | *PLUS Highest resolution: 3 Å / Lowest resolution: 10 Å / σ(F): 2 / Rfactor obs: 0.24 / Rfactor Rwork: 0.24 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS |