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Open data
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Basic information
Entry | Database: PDB / ID: 1dhg | ||||||
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Title | HG-SUBSTITUTED DESULFOREDOXIN | ||||||
![]() | PROTEIN (DESULFOREDOXIN) | ||||||
![]() | ELECTRON TRANSPORT / RUBREDOXIN TYPE PROTEIN | ||||||
Function / homology | Desulforedoxin / Desulfoferrodoxin, N-terminal domain / Desulfoferrodoxin, N-terminal domain superfamily / Desulfoferrodoxin, N-terminal domain / iron ion binding / : / Desulforedoxin![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Archer, M. / Carvalho, A.L. / Teixeira, S. / Moura, I. / Moura, J.J.G. / Rusnak, F. / Romao, M.J. | ||||||
![]() | ![]() Title: Structural studies by X-ray diffraction on metal substituted desulforedoxin, a rubredoxin-type protein. Authors: Archer, M. / Carvalho, A.L. / Teixeira, S. / Moura, I. / Moura, J.J. / Rusnak, F. / Romao, M.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 23.3 KB | Display | ![]() |
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PDB format | ![]() | 15.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 365.4 KB | Display | ![]() |
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Full document | ![]() | 365.4 KB | Display | |
Data in XML | ![]() | 2.6 KB | Display | |
Data in CIF | ![]() | 3.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1cfwC ![]() 1dcdC ![]() 1dxgS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.93226, -0.24064, -0.27016), Vector: |
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Components
#1: Protein/peptide | Mass: 3807.350 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: MERCURY SUBSTITUTED / Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.93 Å3/Da / Density % sol: 36.32 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 7.5 / Details: pH 7.50 | ||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 7.6 / Method: vapor diffusion | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→23.5 Å / Num. obs: 2199 / % possible obs: 94.1 % / Redundancy: 11.4 % / Rsym value: 0.103 / Net I/σ(I): 3.2 |
Reflection | *PLUS Highest resolution: 2.5 Å / Lowest resolution: 23.5 Å / % possible obs: 94.1 % / Num. measured all: 25156 / Rmerge(I) obs: 0.103 |
Reflection shell | *PLUS Highest resolution: 2.5 Å / Lowest resolution: 2.59 Å / % possible obs: 93.1 % / Rmerge(I) obs: 0.359 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1DXG Resolution: 2.5→23.5 Å / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 2.5→23.5 Å
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Refine LS restraints |
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Software | *PLUS Version: 3.1 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.5 Å / Lowest resolution: 23.5 Å / Rfactor obs: 0.182 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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