[English] 日本語
![](img/lk-miru.gif)
- PDB-1d90: REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH I.T MI... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1d90 | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH I.T MISMATCHED BASE PAIRS | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / A-DNA / DOUBLE HELIX / MODIFIED / MISMATCHED | Function / homology | DNA | ![]() Method | ![]() ![]() Cruse, W.B.T. / Aymani, J. / Kennard, O. / Brown, T. / Jack, A.G.C. / Leonard, G.A. | ![]() ![]() Title: Refined crystal structure of an octanucleotide duplex with I.T. mismatched base pairs. Authors: Cruse, W.B. / Aymani, J. / Kennard, O. / Brown, T. / Jack, A.G. / Leonard, G.A. History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 19.2 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 11.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: DNA chain | Mass: 2428.590 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.75 Å3/Da / Density % sol: 55.21 % | |||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | Method: vapor diffusion / pH: 6.5 / Details: pH 6.50, VAPOR DIFFUSION / Temp details: ROOM TEMPERATURE | |||||||||||||||||||||||||||||||||||
Components of the solutions |
| |||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 6.5 / Method: other | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Diffraction | Ambient temp details: ROOM TEMPERATURE |
---|---|
Detector | Type: SIEMENS AED2 / Detector: DIFFRACTOMETER |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 1.66 Å / Num. all: 5795 / Num. obs: 3310 / % possible obs: 57 % / Observed criterion σ(F): 1 / Rmerge(I) obs: 0.04 |
Reflection | *PLUS Observed criterion σ(F): 1 / Rmerge(I) obs: 0.04 |
-
Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Highest resolution: 1.7 Å / σ(F): 2 /
| ||||||||||||
Refine Biso | Class: ALL ATOMS / Details: TR / Treatment: isotropic | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.7 Å
| ||||||||||||
Refinement | *PLUS Highest resolution: 1.7 Å / Lowest resolution: 10 Å / σ(F): 2 / Num. reflection obs: 2853 / Rfactor obs: 0.14 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |