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- PDB-1c4c: BINDING OF EXOGENOUSLY ADDED CARBON MONOXIDE AT THE ACTIVE SITE O... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1c4c | ||||||
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Title | BINDING OF EXOGENOUSLY ADDED CARBON MONOXIDE AT THE ACTIVE SITE OF THE FE-ONLY HYDROGENASE (CPI) FROM CLOSTRIDIUM PASTEURIANUM | ||||||
![]() | PROTEIN (FE-ONLY HYDROGENASE) | ||||||
![]() | OXIDOREDUCTASE / METALLOPROTEINS / [FES] CLUSTERS / HYDROGEN OXIDATION / PROTON REDUCTION | ||||||
Function / homology | ![]() ferredoxin hydrogenase / ferredoxin hydrogenase activity / 4 iron, 4 sulfur cluster binding / iron ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Lemon, B.J. / Peters, J.W. | ||||||
![]() | ![]() Title: Binding of exogenously added carbon monoxide at the active site of the iron-only hydrogenase (CpI) from Clostridium pasteurianum. Authors: Lemon, B.J. / Peters, J.W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 133.2 KB | Display | ![]() |
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PDB format | ![]() | 102.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 419.3 KB | Display | ![]() |
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Full document | ![]() | 428.3 KB | Display | |
Data in XML | ![]() | 12.9 KB | Display | |
Data in CIF | ![]() | 21.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1c4aC ![]() 1fehS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 63911.102 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() | ||||
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#2: Chemical | ChemComp-HC0 / | ||||
#3: Chemical | ChemComp-SF4 / #4: Chemical | ChemComp-FES / | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.6 Å3/Da / Density % sol: 52.7 % | ||||||||||||||||||||
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Crystal grow | pH: 5 / Details: pH 5.0 | ||||||||||||||||||||
Crystal grow | *PLUS pH: 4.6 / Method: batch method | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: MACSCIENCE / Detector: IMAGE PLATE / Date: Apr 15, 1999 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→20 Å / Num. obs: 24879 / % possible obs: 97 % / Observed criterion σ(I): 1 / Redundancy: 9 % / Rmerge(I) obs: 0.052 |
Reflection shell | Resolution: 2.4→2.51 Å / Rmerge(I) obs: 0.13 / % possible all: 79.1 |
Reflection | *PLUS Num. measured all: 234583 |
Reflection shell | *PLUS % possible obs: 79.1 % |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1FEH Resolution: 2.4→20 Å / Cross valid method: THROUGHOUT / σ(F): 1
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Refinement step | Cycle: LAST / Resolution: 2.4→20 Å
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Refine LS restraints |
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