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Yorodumi- PDB-1b36: SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1b36 | ||||||
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Title | SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES | ||||||
Components | RNA (RNA LOOP B) | ||||||
Keywords | RNA / RIBONUCLEIC ACID / TETRALOOP RECEPTOR / GROUP I INTRON / GROUP II INTRON | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / distance geometry | ||||||
Authors | Butcher, S.E. / Dieckmann, T. / Feigon, J. | ||||||
Citation | Journal: Nat.Struct.Biol. / Year: 1999 Title: Solution structure of the loop B domain from the hairpin ribozyme. Authors: Butcher, S.E. / Allain, F.H. / Feigon, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1b36.cif.gz | 239.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1b36.ent.gz | 198.6 KB | Display | PDB format |
PDBx/mmJSON format | 1b36.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1b36_validation.pdf.gz | 323.2 KB | Display | wwPDB validaton report |
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Full document | 1b36_full_validation.pdf.gz | 402.4 KB | Display | |
Data in XML | 1b36_validation.xml.gz | 12 KB | Display | |
Data in CIF | 1b36_validation.cif.gz | 18.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/b3/1b36 ftp://data.pdbj.org/pub/pdb/validation_reports/b3/1b36 | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 12215.317 Da / Num. of mol.: 1 / Fragment: DOMAIN B Source method: isolated from a genetically manipulated source Source: (gene. exp.) synthetic construct (others) / Production host: IN VITRO |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR details | Text: IONIC_STRENGTH: 0.05 M PRESSURE: 1 ATM SOLVENT |
-Sample preparation
Sample conditions | Ionic strength: 0.05M / pH: 6.0 / Temperature: 303 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 750 MHz |
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-Processing
NMR software |
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Refinement | Method: distance geometry / Software ordinal: 1 | ||||||||||||
NMR ensemble | Conformer selection criteria: LOWEST ENERGY STRUCTURES / Conformers calculated total number: 50 / Conformers submitted total number: 10 |