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Yorodumi- PDB-1aaz: THE STRUCTURE OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN (THIOREDOXIN) -
+Open data
-Basic information
Entry | Database: PDB / ID: 1aaz | ||||||
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Title | THE STRUCTURE OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN (THIOREDOXIN) | ||||||
Components | GLUTAREDOXIN | ||||||
Keywords | ELECTRON TRANSPORT | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Enterobacteria phage T4 (virus) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2 Å | ||||||
Authors | Eklund, H. / Ingelman, M. / Soderberg, B.-O. / Uhlin, T. / Nordlund, P. / Nikkola, M. / Sonnerstam, U. / Joelson, T. / Petratos, K. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1992 Title: Structure of oxidized bacteriophage T4 glutaredoxin (thioredoxin). Refinement of native and mutant proteins. Authors: Eklund, H. / Ingelman, M. / Soderberg, B.O. / Uhlin, T. / Nordlund, P. / Nikkola, M. / Sonnerstam, U. / Joelson, T. / Petratos, K. #1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1978 Title: Three-Dimensional Structure of Thioredoxin Induced by Bacteriophage T4 Authors: Soderberg, B.-O. / Sjoberg, B.-M. / Sonnerstam, U. / Branden, C.-I. #2: Journal: J.Mol.Biol. / Year: 1976 Title: Thioredoxin Induced by Bacteriophage T4. Crystallization and Preliminary Crystallographic Data Authors: Sjoberg, B.-M. / Soderberg, B.-O. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1aaz.cif.gz | 66 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1aaz.ent.gz | 50.1 KB | Display | PDB format |
PDBx/mmJSON format | 1aaz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1aaz_validation.pdf.gz | 424.2 KB | Display | wwPDB validaton report |
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Full document | 1aaz_full_validation.pdf.gz | 425.5 KB | Display | |
Data in XML | 1aaz_validation.xml.gz | 11.6 KB | Display | |
Data in CIF | 1aaz_validation.cif.gz | 16.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/aa/1aaz ftp://data.pdbj.org/pub/pdb/validation_reports/aa/1aaz | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO A 66 / 2: CIS PROLINE - PRO B 66 |
-Components
#1: Protein | Mass: 10063.631 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Enterobacteria phage T4 (virus) / Genus: T4-like viruses / Species: Enterobacteria phage T4 sensu lato / References: UniProt: P00276 #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.48 Å3/Da / Density % sol: 50.44 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / Method: vapor diffusion, hanging drop / pH: 6 | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2 Å / Lowest resolution: 2.8 Å / Num. obs: 13500 / Num. measured all: 35300 |
-Processing
Software |
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Refinement | Rfactor Rwork: 0.21 / Rfactor obs: 0.21 / Highest resolution: 2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 2 Å / Rfactor obs: 0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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