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Yorodumi- PDB-1aaf: NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES... -
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-Basic information
Entry | Database: PDB / ID: 1aaf | ||||||
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Title | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 | ||||||
Components | HIV-1 NUCLEOCAPSID PROTEIN | ||||||
Keywords | VIRAL PROTEIN | ||||||
Function / homology | Function and homology information HIV-1 retropepsin / symbiont-mediated activation of host apoptosis / retroviral ribonuclease H / exoribonuclease H / exoribonuclease H activity / host multivesicular body / DNA integration / viral genome integration into host DNA / RNA-directed DNA polymerase / establishment of integrated proviral latency ...HIV-1 retropepsin / symbiont-mediated activation of host apoptosis / retroviral ribonuclease H / exoribonuclease H / exoribonuclease H activity / host multivesicular body / DNA integration / viral genome integration into host DNA / RNA-directed DNA polymerase / establishment of integrated proviral latency / symbiont-mediated suppression of host gene expression / viral penetration into host nucleus / RNA stem-loop binding / RNA-directed DNA polymerase activity / RNA-DNA hybrid ribonuclease activity / Transferases; Transferring phosphorus-containing groups; Nucleotidyltransferases / host cell / viral nucleocapsid / DNA recombination / DNA-directed DNA polymerase / Hydrolases; Acting on ester bonds / aspartic-type endopeptidase activity / DNA-directed DNA polymerase activity / viral translational frameshifting / symbiont entry into host cell / lipid binding / host cell nucleus / host cell plasma membrane / structural molecule activity / virion membrane / proteolysis / DNA binding / zinc ion binding / membrane Similarity search - Function | ||||||
Biological species | Human immunodeficiency virus 1 | ||||||
Method | SOLUTION NMR | ||||||
Authors | Summers, M.F. / Henderson, L.E. / Chance, M.R. / Bess Junior, J.W. / South, T.L. / Blake, P.R. / Sagi, I. / Perez-Alvarado, G. / Sowder, R.C. / Hare, D.R. / Arthur, L.O. | ||||||
Citation | Journal: Protein Sci. / Year: 1992 Title: Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution-state structure of the nucleocapsid protein from HIV-1. Authors: Summers, M.F. / Henderson, L.E. / Chance, M.R. / Bess Jr., J.W. / South, T.L. / Blake, P.R. / Sagi, I. / Perez-Alvarado, G. / Sowder 3rd., R.C. / Hare, D.R. / Arthur, L.O. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1aaf.cif.gz | 354.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1aaf.ent.gz | 294.2 KB | Display | PDB format |
PDBx/mmJSON format | 1aaf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1aaf_validation.pdf.gz | 358.6 KB | Display | wwPDB validaton report |
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Full document | 1aaf_full_validation.pdf.gz | 482.9 KB | Display | |
Data in XML | 1aaf_validation.xml.gz | 19 KB | Display | |
Data in CIF | 1aaf_validation.cif.gz | 31 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/aa/1aaf ftp://data.pdbj.org/pub/pdb/validation_reports/aa/1aaf | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 6468.604 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Human immunodeficiency virus 1 / Genus: Lentivirus / Strain: M/B_MN / Production host: Escherichia coli (E. coli) / References: UniProt: P05961 |
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#2: Chemical |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
NMR ensemble | Conformers submitted total number: 20 |
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