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- PDB-124d: STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE... -
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Open data
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Basic information
Entry | Database: PDB / ID: 124d | ||||||
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Title | STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA | ||||||
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![]() | DNA-RNA HYBRID / DNA-RNA COMPLEX / DOUBLE HELIX | ||||||
Function / homology | DNA / RNA![]() | ||||||
Method | SOLUTION NMR / RESTRAINED MOLECULAR DYNAMICS, NOESY SIMULATION REFINEMENT | ||||||
![]() | Fedoroff, O.Y. / Salazar, M. / Reid, B.R. | ||||||
![]() | ![]() Title: Structure of a DNA:RNA Hybrid Duplex. Why Rnase H Does not Cleave Pure RNA Authors: Fedoroff, O.Y. / Salazar, M. / Reid, B.R. #1: ![]() Title: The DNA Strand in DNA-RNA Hybrid Duplexes is Neither B-Form Nor A-Form in Solution Authors: Salazar, M. / Fedoroff, O.Y. / Miller, J.M. / Ribeiro, N.S. / Reid, B.R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 19.3 KB | Display | ![]() |
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PDB format | ![]() | 11 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 293.7 KB | Display | ![]() |
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Full document | ![]() | 293.5 KB | Display | |
Data in XML | ![]() | 1.6 KB | Display | |
Data in CIF | ![]() | 1.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 2426.617 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: CHEMICALLY SYNTHESIZED |
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#2: RNA chain | Mass: 2526.561 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: CHEMICALLY SYHTHESIZED |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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Processing
Refinement | Method: RESTRAINED MOLECULAR DYNAMICS, NOESY SIMULATION REFINEMENT Software ordinal: 1 Details: 132 NOE RESTRAINTS AND 20 HYDROGEN BONDS WERE USED. |
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NMR ensemble | Conformers calculated total number: 1 / Conformers submitted total number: 1 |