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- EMDB-52641: Porphyromonas gingivalis 70S ribosome (W83 Strain) -

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Basic information

Entry
Database: EMDB / ID: EMD-52641
TitlePorphyromonas gingivalis 70S ribosome (W83 Strain)
Map dataCombined 50S, 30S-body,and 30S-head obtained from Multibody refinement of RELION and aligned to consensus map
Sample
  • Complex: Porphyromonas gingivalis 70S ribosome (W83 Strain)
    • Protein or peptide: x 45 types
    • RNA: x 3 types
  • Ligand: x 5 types
KeywordsAntibiotic / Lefamulin / RIBOSOME
Function / homology
Function and homology information


large ribosomal subunit / transferase activity / ribosomal small subunit biogenesis / ribosomal small subunit assembly / small ribosomal subunit / 5S rRNA binding / small ribosomal subunit rRNA binding / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding ...large ribosomal subunit / transferase activity / ribosomal small subunit biogenesis / ribosomal small subunit assembly / small ribosomal subunit / 5S rRNA binding / small ribosomal subunit rRNA binding / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding / structural constituent of ribosome / ribosome / translation / ribonucleoprotein complex / mRNA binding / RNA binding / cytosol / cytoplasm
Similarity search - Function
: / Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L16 signature 2. / Ribosomal protein L16, conserved site / : / Ribosomal protein L9, bacteria/chloroplast ...: / Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L16 signature 2. / Ribosomal protein L16, conserved site / : / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal protein L17 signature. / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein L32p, bacterial type / Ribosomal protein L28/L24 superfamily / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9 / Ribosomal protein L9, N-terminal / Ribosomal protein L9, N-terminal domain / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L28 / Ribosomal protein L35, non-mitochondrial / Ribosomal protein L18, bacterial-type / : / Ribosomal protein S19, bacterial-type / Ribosomal protein S3, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S14/S29 / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein L9/RNase H1, N-terminal / Ribosomal protein S11, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein L5, bacterial-type / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein S4, bacterial-type / Ribosomal protein L19, conserved site / Ribosomal protein L19 signature. / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein L27, conserved site / Ribosomal protein L27 signature. / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein L20 signature. / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein L14P, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L35 / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal protein L18 / Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast / Ribosomal L28 family / Ribosomal protein L33 superfamily / Ribosomal protein S9, bacterial/plastid / Ribosomal protein L16 / Ribosomal protein S18, conserved site / Ribosomal protein L28/L24 / Ribosomal protein S18 signature. / Ribosomal protein L30, bacterial-type / Ribosomal protein S16 / Ribosomal protein S16 domain superfamily / Ribosomal protein S16 / L28p-like / Ribosomal protein S15, bacterial-type / : / Ribosomal protein S6 / Ribosomal protein S6 / Ribosomal protein L27 / Ribosomal protein S6 superfamily / Ribosomal L27 protein / Ribosomal protein S12, bacterial-type / Ribosomal protein L20 / Ribosomal L32p protein family / Ribosomal protein L19 / Ribosomal protein L19 / Ribosomal protein L20 / Ribosomal protein L20, C-terminal / Ribosomal protein L19 superfamily / Ribosomal protein L21 / Translation elongation factor EF1B/ribosomal protein S6 / Ribosomal protein L32p / Ribosomal protein L17 / Ribosomal protein L17 superfamily / Ribosomal protein L17 / Ribosomal proteins 50S L24/mitochondrial 39S L24 / Ribosomal protein L21-like
Similarity search - Domain/homology
Large ribosomal subunit protein uL23 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL32 / Large ribosomal subunit protein bL25 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein bS18 / Large ribosomal subunit protein bL9 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein bL35 ...Large ribosomal subunit protein uL23 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL32 / Large ribosomal subunit protein bL25 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein bS18 / Large ribosomal subunit protein bL9 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein bL35 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein bL27 / Small ribosomal subunit protein uS15 / Large ribosomal subunit protein bL17 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein bL36 / Large ribosomal subunit protein uL30 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS14 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein uL14 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein uL16 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL22 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL3 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein bL28 / Small ribosomal subunit protein bS16 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL15 / AURKAIP1/COX24 domain-containing protein / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein bL21
Similarity search - Component
Biological speciesPorphyromonas gingivalis (bacteria)
Methodsingle particle reconstruction / cryo EM / Resolution: 3.0 Å
AuthorsHiregange DG / Bashan A / Yonath A
Funding support Israel, 1 items
OrganizationGrant numberCountry
Other privateTHE HELEN AND MILTON A. KIMMELMAN CENTER FOR BIOMOLECULAR STRUCTURE AND ASSEMBLY Israel
CitationJournal: Nucleic Acids Res / Year: 2025
Title: Structural studies of ribosome from an anaerobic Bacteroidetes human pathogen Porphyromonas gingivalis.
Authors: Disha-Gajanan Hiregange / Sarit Samiya / Danuta Mizgalska / Efrat Ben-Zeev / Miriam Waghalter / Andre Rivalta / K Shanmugha Rajan / Yehuda Halfon / Elinor Breiner-Goldstein / Igor ...Authors: Disha-Gajanan Hiregange / Sarit Samiya / Danuta Mizgalska / Efrat Ben-Zeev / Miriam Waghalter / Andre Rivalta / K Shanmugha Rajan / Yehuda Halfon / Elinor Breiner-Goldstein / Igor Kaczmarczyk / Aneta Sroka / Masato Taoka / Yuko Nobe / Toshiaki Isobe / Susanne Paukner / Ella Zimmerman / Anat Bashan / Jan Potempa / Ada Yonath /
Abstract: Porphyromonas gingivalis, an anaerobic pathogen in chronic periodontitis, belongs to the Bacteroidota phylum and is associated with various virulence factors. Its antibiotic-resistant strains and its ...Porphyromonas gingivalis, an anaerobic pathogen in chronic periodontitis, belongs to the Bacteroidota phylum and is associated with various virulence factors. Its antibiotic-resistant strains and its propensity to form biofilms pose a challenge to effective treatment. To explore therapeutic avenues, we studied the high-resolution cryogenic electron microscope structures of ribosomes from the wild-type P. gingivalis W83 and the macrolide-resistant mutant strain ermΔporN. The structural analysis revealed unique features primarily at the ribosome periphery. Together with the distinctive distribution of ribosomal RNA modifications, these findings offer insights into the therapeutical potential, such as creation of novel therapeutic compounds inhibiting the specific cellular functions of the P. gingivalis ribosomes. Moreover, the high-resolution structure of the ermΔporN ribosome in its complex with the approved antibiotic lefamulin suggests its repurposing against P. gingivalis. Furthermore, we provide a foundation for additional effective strategies to treat periodontitis and associated systemic diseases.
History
DepositionJan 28, 2025-
Header (metadata) releaseAug 20, 2025-
Map releaseAug 20, 2025-
UpdateAug 20, 2025-
Current statusAug 20, 2025Processing site: PDBe / Status: Released

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Structure visualization

Supplemental images

emd_52641.png

Downloads & links

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Map

FileDownload / File: emd_52641.map.gz / Format: CCP4 / Size: 325 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationCombined 50S, 30S-body,and 30S-head obtained from Multibody refinement of RELION and aligned to consensus map
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
0.84 Å/pix.
x 440 pix.
= 370.48 Å		0.84 Å/pix.
x 440 pix.
= 370.48 Å		0.84 Å/pix.
x 440 pix.
= 370.48 Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 0.842 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.005
Minimum - Maximum-0.0770736 - 0.18162465
Average (Standard dev.)0.0004188238 (±0.004143509)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions440440440
Spacing440440440
CellA=B=C: 370.48 Å
α=β=γ: 90.0 °

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Supplemental data

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Sample components

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Entire : Porphyromonas gingivalis 70S ribosome (W83 Strain)

EntireName: Porphyromonas gingivalis 70S ribosome (W83 Strain)
Components
  • Complex: Porphyromonas gingivalis 70S ribosome (W83 Strain)
    • Protein or peptide: Large ribosomal subunit protein bL28
    • Protein or peptide: Large ribosomal subunit protein uL29
    • Protein or peptide: AURKAIP1/COX24 domain-containing protein
    • Protein or peptide: Large ribosomal subunit protein uL30
    • Protein or peptide: Large ribosomal subunit protein bL32
    • Protein or peptide: Large ribosomal subunit protein bL33
    • Protein or peptide: Large ribosomal subunit protein bL34
    • Protein or peptide: Large ribosomal subunit protein bL35
    • Protein or peptide: Large ribosomal subunit protein bL36
    • RNA: 23S rRNA
    • RNA: 5S rRNA
    • Protein or peptide: Large ribosomal subunit protein uL2
    • Protein or peptide: Large ribosomal subunit protein uL3
    • Protein or peptide: Large ribosomal subunit protein uL4
    • Protein or peptide: Small ribosomal subunit protein bS18
    • Protein or peptide: Small ribosomal subunit protein uS9
    • Protein or peptide: Small ribosomal subunit protein uS10
    • Protein or peptide: Small ribosomal subunit protein uS11
    • Protein or peptide: Large ribosomal subunit protein uL13
    • Protein or peptide: Large ribosomal subunit protein uL14
    • Protein or peptide: Large ribosomal subunit protein uL15
    • Protein or peptide: Large ribosomal subunit protein uL16
    • Protein or peptide: Large ribosomal subunit protein bL17
    • Protein or peptide: Large ribosomal subunit protein uL18
    • Protein or peptide: Large ribosomal subunit protein bL19
    • Protein or peptide: Large ribosomal subunit protein bL20
    • Protein or peptide: Large ribosomal subunit protein bL21
    • Protein or peptide: Large ribosomal subunit protein uL22
    • Protein or peptide: Large ribosomal subunit protein uL23
    • Protein or peptide: Large ribosomal subunit protein uL24
    • Protein or peptide: Large ribosomal subunit protein bL25
    • Protein or peptide: Large ribosomal subunit protein bL27
    • RNA: 16S rRNA
    • Protein or peptide: Small ribosomal subunit protein bS6
    • Protein or peptide: Small ribosomal subunit protein bS16
    • Protein or peptide: Small ribosomal subunit protein bS20
    • Protein or peptide: Small ribosomal subunit protein uS17
    • Protein or peptide: Small ribosomal subunit protein uS15
    • Protein or peptide: Small ribosomal subunit protein uS14
    • Protein or peptide: Large ribosomal subunit protein bL9
    • Protein or peptide: Small ribosomal subunit protein uS13
    • Protein or peptide: Small ribosomal subunit protein uS12
    • Protein or peptide: Small ribosomal subunit protein uS3
    • Protein or peptide: Small ribosomal subunit protein uS4
    • Protein or peptide: Small ribosomal subunit protein uS7
    • Protein or peptide: Small ribosomal subunit protein uS5
    • Protein or peptide: Small ribosomal subunit protein uS8
    • Protein or peptide: Small ribosomal subunit protein uS19
  • Ligand: MAGNESIUM ION
  • Ligand: ZINC ION
  • Ligand: POTASSIUM ION
  • Ligand: SODIUM ION
  • Ligand: water

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Supramolecule #1: Porphyromonas gingivalis 70S ribosome (W83 Strain)

SupramoleculeName: Porphyromonas gingivalis 70S ribosome (W83 Strain) / type: complex / ID: 1 / Parent: 0
Macromolecule list: #2-#3, #46, #4-#14, #48, #47, #15-#28, #44, #29-#43, #45, #1
Details: 70S ribosome of W83 strain
Source (natural)Organism: Porphyromonas gingivalis (bacteria)

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Macromolecule #1: Small ribosomal subunit protein uS19

MacromoleculeName: Small ribosomal subunit protein uS19 / type: protein_or_peptide / ID: 1 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 9.929733 KDa
SequenceString:
MSRSLKKGPY INLKLEKKVL AMNESGKKAV IKTWARASMI SPDFVGHTIA VHNGNKFIPV FVTENMVGHK LGEFSPTRTF RGHAGNKKK

UniProtKB: Small ribosomal subunit protein uS19

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Macromolecule #2: Large ribosomal subunit protein bL28

MacromoleculeName: Large ribosomal subunit protein bL28 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 9.027753 KDa
SequenceString:
MSKICQITGK KAMVGNNVSH SKRRTKRVFD VNLFRKKFYW VEQDCWVVLR ISAAGLRLIN KIGLDAAIKR AAEKGFLNA

UniProtKB: Large ribosomal subunit protein bL28

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Macromolecule #3: Large ribosomal subunit protein uL29

MacromoleculeName: Large ribosomal subunit protein uL29 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 7.499825 KDa
SequenceString:
MKIAEIKELA TKELQERLDA EVAAYDQMRI NHAVSPLDSP AKLKHQRRMI AQMKTVLRQR ELNK

UniProtKB: Large ribosomal subunit protein uL29

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Macromolecule #4: Large ribosomal subunit protein uL30

MacromoleculeName: Large ribosomal subunit protein uL30 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 6.700087 KDa
SequenceString:
MAKIKIQQVR SRIRCPKDQK RTLDALGLRK LNQIVEHEAT PSILGMVNKV RHLVLIVE

UniProtKB: Large ribosomal subunit protein uL30

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Macromolecule #5: Large ribosomal subunit protein bL32

MacromoleculeName: Large ribosomal subunit protein bL32 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 6.958199 KDa
SequenceString:
MAHPKRRQSK TRTAKRRTHD KAVMPTLAKC PNCGAWHIYH TVCGDCGYYR GKLAIEKEVA V

UniProtKB: Large ribosomal subunit protein bL32

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Macromolecule #6: Large ribosomal subunit protein bL33

MacromoleculeName: Large ribosomal subunit protein bL33 / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 7.356796 KDa
SequenceString:
MAKKVKGNRV QVILECTEHK ESGMPGISRY ITTKNRKNTT QRLELKKYNP ILRRMTLHKE IK

UniProtKB: Large ribosomal subunit protein bL33

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Macromolecule #7: Large ribosomal subunit protein bL34

MacromoleculeName: Large ribosomal subunit protein bL34 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 5.761748 KDa
SequenceString:
MKRTYQPSNR KRLNKHGFRS RMATANGRRV LAARRAKGRA KLTVSDEFVG

UniProtKB: Large ribosomal subunit protein bL34

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Macromolecule #8: Large ribosomal subunit protein bL35

MacromoleculeName: Large ribosomal subunit protein bL35 / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 7.518082 KDa
SequenceString:
MPKLKTNSGA KKRFALTGTG KIKRKHAFKS HILTKKTKKQ KRNLTYFSTV HKVDENAVKQ LLCLR

UniProtKB: Large ribosomal subunit protein bL35

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Macromolecule #9: Large ribosomal subunit protein bL36

MacromoleculeName: Large ribosomal subunit protein bL36 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 4.601648 KDa
SequenceString:
MKVRASVKKR TPECKIVRRK GRLYVINKKN PKYKQRQG

UniProtKB: Large ribosomal subunit protein bL36

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Macromolecule #12: Large ribosomal subunit protein uL2

MacromoleculeName: Large ribosomal subunit protein uL2 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 29.778553 KDa
SequenceString: MGIRKLKPTT PGQRHKVIGA FDKITASTPE KSLVVGKKKT GGRNNTGKMT MRYIGGGHKQ KYRFIDFKRT KDGIPATVKT IEYDPNRSS RIALLYYADG AKAYIIAPDG LEVGHTVMSG SEAAPEVGNA LPLANIPVGT IIHNIELRPG QGAKMVRSAG S FAQLTSRE ...String:
MGIRKLKPTT PGQRHKVIGA FDKITASTPE KSLVVGKKKT GGRNNTGKMT MRYIGGGHKQ KYRFIDFKRT KDGIPATVKT IEYDPNRSS RIALLYYADG AKAYIIAPDG LEVGHTVMSG SEAAPEVGNA LPLANIPVGT IIHNIELRPG QGAKMVRSAG S FAQLTSRE GTYVVIKMPS GEVRRILSTC KATIGSVGNS DHALEKSGKA GRSRWLGRRP HNRGVVMNPV DHPMGGGEGR QS GGHPRSR KGLYAKGLKT RAPKKHSSKY IIERRKK

UniProtKB: Large ribosomal subunit protein uL2

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Macromolecule #13: Large ribosomal subunit protein uL3

MacromoleculeName: Large ribosomal subunit protein uL3 / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 21.925488 KDa
SequenceString: MPGLLGKKIG MTSVFSAEGK NLPCTVIEVG PCVVTQVKTL EKDGYSALQL GFVDAKEKHT TKPLAGHFKK ANVAPKRHLA EFKNFEGEH KLGDVLNVEF FSDADFVDVV GTSKGKGFQG VVKRHGFGGV GQATHGQHNR LRAPGAVGAC SYPAKVFKGT R MAGQMGNE ...String:
MPGLLGKKIG MTSVFSAEGK NLPCTVIEVG PCVVTQVKTL EKDGYSALQL GFVDAKEKHT TKPLAGHFKK ANVAPKRHLA EFKNFEGEH KLGDVLNVEF FSDADFVDVV GTSKGKGFQG VVKRHGFGGV GQATHGQHNR LRAPGAVGAC SYPAKVFKGT R MAGQMGNE RVTVQNLEVI KVMPEHNLLL VKGSVPGAKG SILLIEK

UniProtKB: Large ribosomal subunit protein uL3

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Macromolecule #14: Large ribosomal subunit protein uL4

MacromoleculeName: Large ribosomal subunit protein uL4 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 23.247879 KDa
SequenceString: MELSVYNIKG EDTGKKVVLD DSIFAIEPND HAIYLDVKQY MANQRQGTHK AKERSELSGS TRKLIRQKGS GGARRGDINS PLLSGGARV FGPRPRNYSF KLNKKLKALA RRSALSYKAK NNEIIVVEDF NFDAPKTKAF KAISAALKVG EKKVLYVLPE V NKNVYLSA ...String:
MELSVYNIKG EDTGKKVVLD DSIFAIEPND HAIYLDVKQY MANQRQGTHK AKERSELSGS TRKLIRQKGS GGARRGDINS PLLSGGARV FGPRPRNYSF KLNKKLKALA RRSALSYKAK NNEIIVVEDF NFDAPKTKAF KAISAALKVG EKKVLYVLPE V NKNVYLSA RNLPNTNLIL ANLINTYTVL ASKNLVLTER SVAVVNELFK A

UniProtKB: Large ribosomal subunit protein uL4

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Macromolecule #15: Small ribosomal subunit protein uS10

MacromoleculeName: Small ribosomal subunit protein uS10 / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 11.468562 KDa
SequenceString:
MSQKIRIKLK SYDYMLVDKS AEKIVKTVKA AGAMVSGPIP LPTHKRIFTV NRSTFVNKKS REQFELSSYK RLIDIYNSTA KTVDALMKL ELPSGVEVEI KV

UniProtKB: Small ribosomal subunit protein uS10

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Macromolecule #16: Small ribosomal subunit protein uS11

MacromoleculeName: Small ribosomal subunit protein uS11 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 13.857208 KDa
SequenceString:
MAKKAVAKKK VVRVEAVGQA HIHSSFNNII ISLANSEGQV ISWSSAGKMG FRSSKKNTPY AAQMAAQDCA KVAYDMGLRK VTVYVKGPG NGRESAIRTI HGAGIEVMEI IDVTPMPHNG CRPPKKRRV

UniProtKB: Small ribosomal subunit protein uS11

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Macromolecule #17: Large ribosomal subunit protein uL13

MacromoleculeName: Large ribosomal subunit protein uL13 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 17.075834 KDa
SequenceString:
MDTLSFKTIS ANKATVTKEW VIVDAEGQTL GRMCAKVAKL LRGKYKPNFT PHVDCGDNVI VINADKIVLS GNKWDGRIYL RHTGYPGGQ RQFTPRDFMN KGPEYLFRKV VKGMLPKNRL GAKIIGNLYV YAGTEHKHEA QQPRQLDINS LK

UniProtKB: Large ribosomal subunit protein uL13

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Macromolecule #18: Large ribosomal subunit protein uL14

MacromoleculeName: Large ribosomal subunit protein uL14 / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 13.086286 KDa
SequenceString:
MIQQESRLVV ADNSGAKEAL CIRVLGGTRR RYASVGDIIV VSVKSVIPSS DIKKGAVSKA VIVRTKKEVR RPDGSYIRFD DNACVLLNA AGDIRGSRIF GPVARELRGT NMKIVSLAPE VL

UniProtKB: Large ribosomal subunit protein uL14

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Macromolecule #19: Large ribosomal subunit protein uL15

MacromoleculeName: Large ribosomal subunit protein uL15 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 15.61607 KDa
SequenceString:
MNLSSLKPAE GAVKSRKRIG RGPGSGLGGT STRGHKGAKS RSGYSKKIGF EGGQMPIQRR LPKFGFKNIN RVEYKPINLS VLQTLSEAN SLTKISVEDL IAAGLVSRNS LVKILANGTV TTALTVEAHA FSKTAEEAIV RAGGSVVKL

UniProtKB: Large ribosomal subunit protein uL15

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Macromolecule #20: Large ribosomal subunit protein uL16

MacromoleculeName: Large ribosomal subunit protein uL16 / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 16.344123 KDa
SequenceString:
MLQPKKTKFR RQQKGRMKGF AQRGNQLSFG SFGIKSLQSK WITGRQIEAA RIAVTRYMQR QGQVWVRIFP DKPITKKGEG VRMGKGKGA PEGFVAPITP GRIIFEVEGV PYEIAKEALR LAAQKLPVTT KFVVRHDYDI QNQNA

UniProtKB: Large ribosomal subunit protein uL16

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Macromolecule #21: Large ribosomal subunit protein bL17

MacromoleculeName: Large ribosomal subunit protein bL17 / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 18.074082 KDa
SequenceString:
MRHNKKFNHL GRKAAHRKAM LSNMAASLIL HKRIFTTVAK AKALRIYVEP LLTKTKEDTT HSRRIAFSYL QNKYALKELF GDVAAKIAD RPGGYTRILK TGYRLGDNAA MCFIELVDYN ENMLGEAAKK ATKTRRSRKR KSADVVVEAA PAEETPKAAE E

UniProtKB: Large ribosomal subunit protein bL17

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Macromolecule #22: Large ribosomal subunit protein uL18

MacromoleculeName: Large ribosomal subunit protein uL18 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 12.560597 KDa
SequenceString:
MVTKEQRRQK IKARVRGKIS GTQEKPRLTV FRSNKQIYAQ LIDDIAGRTL ASASSLKLEM TGSKKEIAAK VGDEIAKAAT EAGISTVVF DRNGYLFHGR IKELADAARK GGLKF

UniProtKB: Large ribosomal subunit protein uL18

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Macromolecule #23: Large ribosomal subunit protein bL19

MacromoleculeName: Large ribosomal subunit protein bL19 / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 14.120454 KDa
SequenceString:
MDFIKIVNEE FKSGKEHPKF NSGDTITVEY RIKEGNKERI QKYRGVVIRI SGHGDKKRFT VRKISDGIGV ERIFPIESPF IENITVEKY GKVRRAKLYY LRGLTGKKAR IKERRVALSS KD

UniProtKB: Large ribosomal subunit protein bL19

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Macromolecule #24: Large ribosomal subunit protein bL20

MacromoleculeName: Large ribosomal subunit protein bL20 / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 13.324705 KDa
SequenceString:
MPRSVNHVAS RAKRKRILKL TRGYFGARKN VWTVAKNTWE KGLTYAYRDR KSKKRNFRAL WIQRINAAAR LEGMSYSRLM GALHANGIE INRKVLADLA MNHPEAFRAI VAKVKN

UniProtKB: Large ribosomal subunit protein bL20

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Macromolecule #25: Large ribosomal subunit protein bL21

MacromoleculeName: Large ribosomal subunit protein bL21 / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 11.843913 KDa
SequenceString:
MYVIVDIQGQ QMKVEQGRRL FVHHIKDVES GASVEFDKVL LVDNNGAITV GSPLVEGAKV VCEVLTPLVK GDKVLIFHKK RRKGYRKLN GHRQQFTEIL VKEVVA

UniProtKB: Large ribosomal subunit protein bL21

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Macromolecule #26: Large ribosomal subunit protein uL22

MacromoleculeName: Large ribosomal subunit protein uL22 / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 15.35775 KDa
SequenceString:
MGARKHNSAE ARKEALKQMY FAKLRNVPTS PRKMRLVADM IRGMEVNRAL GVLKFSNKEA SARVEKLLRS AVANWEEKNE RKAEEGELF VSRICVDGAS TLKRLRPAPQ GRGYRIRKRS NHVTIYVDTL NNDNN

UniProtKB: Large ribosomal subunit protein uL22

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Macromolecule #27: Large ribosomal subunit protein uL23

MacromoleculeName: Large ribosomal subunit protein uL23 / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 11.116101 KDa
SequenceString:
MGIIIKPIIS EKMTAVTEKM SERYGFRVSP NANKIEIKKA VEAMYNVKVE DVNTMRYDGK RKNRYTKSGL IRGKEASFKK AIVTLKKGE TIDFFSNI

UniProtKB: Large ribosomal subunit protein uL23

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Macromolecule #28: Large ribosomal subunit protein uL24

MacromoleculeName: Large ribosomal subunit protein uL24 / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 11.627664 KDa
SequenceString:
MSKLHIKKGD TVMVISGEDK GHSGRVLEVL VKEQRAIVEG LNMIKKHAKP SAKNPQGGII SKEAPIHISN LNVVDPKTGK ATRIGRRLN ENGKLVRYAK KSGEEIK

UniProtKB: Large ribosomal subunit protein uL24

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Macromolecule #29: Large ribosomal subunit protein bL27

MacromoleculeName: Large ribosomal subunit protein bL27 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 9.244613 KDa
SequenceString:
MAHKKGVGSS KNGRESESKR LGVKVYGGEM AKAGNILVRQ RGTVHHPGEN VGIGKDHTLY ALKSGVVVFT RKKNDRSYVS IKTES

UniProtKB: Large ribosomal subunit protein bL27

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Macromolecule #31: Small ribosomal subunit protein bS6

MacromoleculeName: Small ribosomal subunit protein bS6 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 13.613594 KDa
SequenceString:
MNNYETVFIL TPVLSDAQMK EAVDKFTGLL KQEGAVIVNE ENWGLRKLAY PIQKKSTGFY QLVEFQANPD VIAKLETNFR RDERVIRFL TFRQDKFAAE YAAKRRSLKA KTEEVKEA

UniProtKB: Small ribosomal subunit protein bS6

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Macromolecule #32: Small ribosomal subunit protein bS16

MacromoleculeName: Small ribosomal subunit protein bS16 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 20.703471 KDa
SequenceString: MATKIRLQRH GRKGYAFYKI VVADSRAPRD GKFIERIGSY NPNTNPATID LNFERALYWI GVGAQPTDTA RNILSREGVL MMKHLLGGV KKGAFDQAAA ENKFEAWLKG KKDALNNMKA KVKEAAVADD KVKLEAEKAV NKARAEAVAE KKAAEAKAKA E AEAAAAAE ...String:
MATKIRLQRH GRKGYAFYKI VVADSRAPRD GKFIERIGSY NPNTNPATID LNFERALYWI GVGAQPTDTA RNILSREGVL MMKHLLGGV KKGAFDQAAA ENKFEAWLKG KKDALNNMKA KVKEAAVADD KVKLEAEKAV NKARAEAVAE KKAAEAKAKA E AEAAAAAE EAAETEETPV EAAAEEAPAA ESAE

UniProtKB: Small ribosomal subunit protein bS16

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Macromolecule #33: Small ribosomal subunit protein bS20

MacromoleculeName: Small ribosomal subunit protein bS20 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 9.711351 KDa
SequenceString:
MANHISSEKR IRQTNARRLH NRYYARTARN AVKAFRALTD RTEAEKKYPV LASMLDRLAG KNIIHKNKAA NLKSKLARRI NTLA

UniProtKB: Small ribosomal subunit protein bS20

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Macromolecule #34: Small ribosomal subunit protein uS17

MacromoleculeName: Small ribosomal subunit protein uS17 / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 10.020758 KDa
SequenceString:
MERNLRKERV GVVSSNKMDK TITVAVKWKE KHPIYGKFVN KTKKYHAHDE KNECGIGDTV RIMETRPLSR TKRWRLTEII ERAK

UniProtKB: Small ribosomal subunit protein uS17

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Macromolecule #35: Small ribosomal subunit protein uS15

MacromoleculeName: Small ribosomal subunit protein uS15 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 10.584465 KDa
SequenceString:
MYLDSAKKAE LFEKYGKSVK DTGSPESQIA LFTFRIAHLT EHLRQNKKDF ATERSLKMLV GKRRRMLDYL IKVDIERYRA IIKELGIRR

UniProtKB: Small ribosomal subunit protein uS15

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Macromolecule #36: Small ribosomal subunit protein uS14

MacromoleculeName: Small ribosomal subunit protein uS14 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 9.970877 KDa
SequenceString:
MAKESMKARE VKRAKLVAKY AAKRAALKAE GNYEALQLLP KNASPVRLHN RCSMTGRPKG YMRQFGISRI QFREMASAGL IPGVKKASW

UniProtKB: Small ribosomal subunit protein uS14

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Macromolecule #37: Large ribosomal subunit protein bL9

MacromoleculeName: Large ribosomal subunit protein bL9 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 19.356211 KDa
SequenceString:
MQVILKEDVV NLGYKDDIVT VKDGYGRNFL IPQGKAVIAS ESAKKVLAEN LRQRAHKIAQ IKKEAEEKAA SMQGISLTIK AKTSSTGTI FGSVTNIQIA EELAKKGVEV DRKIIVLKPA VKEVGNYTAV VRLHKEVTVE IPFEVVSENE TIIEAKPEGA P VPVAEEPA AEAEQAEVAA E

UniProtKB: Large ribosomal subunit protein bL9

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Macromolecule #38: Small ribosomal subunit protein uS13

MacromoleculeName: Small ribosomal subunit protein uS13 / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 14.023417 KDa
SequenceString:
MAIRIVGVDL PQNKRGFIAL TYIYGIGRSS AITILDKAGV DRDIKVKDWS DDQAAAIRDV IGAGYKVEGD LRSEVQLNIK RLMDIGCYR GIRHRIGLPL RGQSTKNNAR TRKGKKKTVA NKKKATK

UniProtKB: Small ribosomal subunit protein uS13

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Macromolecule #39: Small ribosomal subunit protein uS12

MacromoleculeName: Small ribosomal subunit protein uS12 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 14.802225 KDa
SequenceString:
MPTIQQLVRK GRESFADKSK SPALNSCPQR RGVCVRVYTT TPKKPNSAMR KVARVRLTNS KEVNAYIPGE GHNLQEHSIV LVRGGRVKD LPGVRYHIVR GTLDTAGVNG RTQRRSKYGA KRPKPGQAPA AKGKK

UniProtKB: Small ribosomal subunit protein uS12

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Macromolecule #40: Small ribosomal subunit protein uS3

MacromoleculeName: Small ribosomal subunit protein uS3 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 27.620191 KDa
SequenceString: MGQKINPVSN RLGIIRGWDS NWYGGRKYGE TLLEDSRIRQ YLNARLAKAS VSRIVIERAL KLVTITICTA RPGMIIGKAG QEVDKLKEE LKRITKKDVQ INIYEIRKPE LDAAIVAENI ARQLEGKIAY RRAVKMAIAS AMRMGAEGIK IQVSGRLNGA E MARSEMFK ...String:
MGQKINPVSN RLGIIRGWDS NWYGGRKYGE TLLEDSRIRQ YLNARLAKAS VSRIVIERAL KLVTITICTA RPGMIIGKAG QEVDKLKEE LKRITKKDVQ INIYEIRKPE LDAAIVAENI ARQLEGKIAY RRAVKMAIAS AMRMGAEGIK IQVSGRLNGA E MARSEMFK EGRTPLHTLR ADIDYALAEA LTKVGLLGIK VWICKGEVYE KRDLAPNFAV AKNQSRRPNA QGGNNRGGDR NR RRKGNR

UniProtKB: Small ribosomal subunit protein uS3

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Macromolecule #41: Small ribosomal subunit protein uS4

MacromoleculeName: Small ribosomal subunit protein uS4 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 22.969441 KDa
SequenceString: MARYTGPKSK IARKFGDPIF GADKVLSKKN YPPGQHGNNR RRKTSEYGLQ LREKQKAKYT YGVLEKQFRH LFHRAQRAKG VTGELLIQF LEARLDNVVF RLGIAPTRSA ARQLVSHRHI TVDGSVVNIP SYSVKPGQVI GVRERSKSLE VIADALTGFN H SKYPWMEW ...String:
MARYTGPKSK IARKFGDPIF GADKVLSKKN YPPGQHGNNR RRKTSEYGLQ LREKQKAKYT YGVLEKQFRH LFHRAQRAKG VTGELLIQF LEARLDNVVF RLGIAPTRSA ARQLVSHRHI TVDGSVVNIP SYSVKPGQVI GVRERSKSLE VIADALTGFN H SKYPWMEW DQSSLSGKLL HMPDRTDIPE NIKEQLIVEL YSK

UniProtKB: Small ribosomal subunit protein uS4

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Macromolecule #42: Small ribosomal subunit protein uS7

MacromoleculeName: Small ribosomal subunit protein uS7 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 18.13408 KDa
SequenceString:
MRKAKPKKRQ ILPDPVYGDV RVTKFVNHLM YDGKKNTAFS IFYGALDIVK TKHSNEEKSA LEIWKAALDN ITPQVEVKSR RIGGATFQV PTEIRPERKE SISMKNLILY ARKRGGKTMA DKLAAEIVDA FNNQGAAFKR KEDMHRMAEA NRAFAHFRF

UniProtKB: Small ribosomal subunit protein uS7

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Macromolecule #43: Small ribosomal subunit protein uS5

MacromoleculeName: Small ribosomal subunit protein uS5 / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 17.870742 KDa
SequenceString:
MAIVYNRVKS TNDLELKDRL VAINRVTKVT KGGRTFTFAA IVVVGNEDGV IGWGLGKAGE VPAAIAKGVE AAKKNLIRVP VHNGTIPHE QAASYGGASV FLKPATTGTG VKAGGAMRAV LDSVGVTDVL AKSKGSSNPH NLVKATIQAL AEMRSPLMVA Q NRGISVEK VFKG

UniProtKB: Small ribosomal subunit protein uS5

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Macromolecule #44: Large ribosomal subunit protein bL25

MacromoleculeName: Large ribosomal subunit protein bL25 / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 21.028605 KDa
SequenceString: MKTFQLTGTP RAEFGKKAAK AIRKEDQIPA VLYGGKGEGV NFIVSQDAVR NLIYSPEIFL VELTVEGSGS YKAILKEIQF HPVTDRIIH IDFLQVTDEK PVVMEVPVVL TGHAEGVKAG GKLSLEMRKL KVKALYSEIP EKLDIDVSDL QLGKTIQVGE L HFEGLTLM ...String:
MKTFQLTGTP RAEFGKKAAK AIRKEDQIPA VLYGGKGEGV NFIVSQDAVR NLIYSPEIFL VELTVEGSGS YKAILKEIQF HPVTDRIIH IDFLQVTDEK PVVMEVPVVL TGHAEGVKAG GKLSLEMRKL KVKALYSEIP EKLDIDVSDL QLGKTIQVGE L HFEGLTLM NAKNAVVCAV KLTRAARGAA VKKQ

UniProtKB: Large ribosomal subunit protein bL25

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Macromolecule #45: Small ribosomal subunit protein uS8

MacromoleculeName: Small ribosomal subunit protein uS8 / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 14.823507 KDa
SequenceString:
MTDPIADYLT RLRNAIMAGH RVVSVPASNI KKEITKILFD KGYILNYKFE ENDSQGIIKV ALKYDLAHKV NAIKKLKRVS RPGLRKYVG YRDMPRVLNG LGIAIVSTPR GVMTDKEARE LKVGGEVLCY VY

UniProtKB: Small ribosomal subunit protein uS8

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Macromolecule #46: AURKAIP1/COX24 domain-containing protein

MacromoleculeName: AURKAIP1/COX24 domain-containing protein / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 3.827865 KDa
SequenceString:
MPNGKKRKRH KMATHKRKKR LKKNRHKKKK

UniProtKB: AURKAIP1/COX24 domain-containing protein

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Macromolecule #47: Small ribosomal subunit protein uS9

MacromoleculeName: Small ribosomal subunit protein uS9 / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 14.556106 KDa
SequenceString:
MDYINAIGRR KAAVARVYLS EGSGKIVINK REIEQYFPSS ILQYIVKQPL LKLDVAAKYD IKINLRGGGF KGQSEAARLA IARALVKIN PDDKPALRSE GFITRDPRVV ERKKPGRPKA RKRFQFSKR

UniProtKB: Small ribosomal subunit protein uS9

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Macromolecule #48: Small ribosomal subunit protein bS18

MacromoleculeName: Small ribosomal subunit protein bS18 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 10.644671 KDa
SequenceString:
MAANNQGEIR YLTPLSVDTK KKKYCRFKKS GIRYIDYKDP EFLKKFLNEQ GKILPRRITG TSLKFQRRVA QAVKRARHLA LLPYVTDMM K

UniProtKB: Small ribosomal subunit protein bS18

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Macromolecule #10: 23S rRNA

MacromoleculeName: 23S rRNA / type: rna / ID: 10 / Number of copies: 1
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 936.413062 KDa
SequenceString: UAAGGGCAGA CGGUGGAUGC CUAGGCUCUC GGAGGCGAAG AAGGACGUGA UAAGCUGCGA AAAGCUGCGG GAAUCGGCAC AUACGAAUU GAUCCGCAGA UAUCCGAAUG GGGCAACCCG UCAGGCCAAG GCCUGACACA UGAAUUGAUU UCAUGAGCGA A CGCGGGGA ...String:
UAAGGGCAGA CGGUGGAUGC CUAGGCUCUC GGAGGCGAAG AAGGACGUGA UAAGCUGCGA AAAGCUGCGG GAAUCGGCAC AUACGAAUU GAUCCGCAGA UAUCCGAAUG GGGCAACCCG UCAGGCCAAG GCCUGACACA UGAAUUGAUU UCAUGAGCGA A CGCGGGGA ACUGAAACAU CUCAUUACCC GUAGGAGAAG AAAACAAAAG UGAUUCCCUC AGUAGUGGCG AGCGAACGGG GA UUAGCCC AAACCGGCUU UGUUUCGGCA AAGUCGGGGU AAUAGGACUU CGACAAAAGU UUAAUGAUAG AUAUAGGAGA ACC UACUGG AAAGUAUGGC CGAAGAGCAU GAAAGCUGCG UAUCCGACAU AUCGAACAAU AGACGACGGA GCACCUGAGU AGCG CGGGA CACGAGACAU CCUGUGUGAA UUGGCGGGGC CCAUCCCGUA AGGCUAAAUA CUCCCGAGAG ACCGAUAGUG AACCA GUAC CGUGAGGGAA AGGUGAAAAG AACCUCGAAC AGAGGAGUGC AAUAGACCCU GAACCCGUCU GCCUACAAGC GGUAGG AGC GCCAUUAAGG UGUGACUGCG UGCCUUUUGC AUAAUGAACC UACGAGUUAC UGUUUGUGGC AAGGUUAAUU GUUAUAA UC AAGACAAGGA GCCGAAGCGA AAGCGAGUCU UAAAAGGGCG CCCAUUUAGU CACGAGCAGU AGACGCGAAA CCAAGUGA U CUACCCUUGG UCAGGUUGAA GGUUAGGUAA CACUAACUGG AGGACCGAAU CGGUAAGCG(H2U) UGAAAAGCUU UCGAA UGAA CUGAGGGUAG GGGUGAAAGG CUAAUCAAAC UUGGAGAUAG CUCGUACUCC CCGAAAUGCA UUUAGGUGCA GCCUG (H2U)UGG AUGUUAUCAU GAGGUAGAGC GACUGAUUGG AUGCGAGGGU UUCACCGCCU AUCAAGUCCA GAUAAACUCC GA AUGCAUG AUAAUUGACC GAUGGAGUGA GGGCAUGGGU GCUAAGGUCC AUGUCCGAGA GGAGAAGAAU CCGGACCACC GGC UAAGGU CCCGAAAUAA UUGCUAAGUU GUAAAAACGA AGUCAAGAAG CAGAGACAGC UAGGAUGUUG GCUUGGAAGC AGCC AUUCA UUUAAAGAGU GCGUAACAGC UCACUAGUCG AGGAUUUUGG CAUGGAUAAU ACACGGGCAU AAGCAAUUUA CCGAA GCCG UGGGAUAUAG UUAAUAUAUC GGUAGGGGAG CAUUCCAGCG ACGUAGAAGG GAAAAGGGCG ACUUUUUCUG GAGUUU CUG GAAAAGCAAA UGUAGGUAUA AGUAACGAUA AAGGGGGCGA GAACCCCCCU CGCCGAAAGA CCAAGGAUUC CUGAUCA AC GCUAAUCGGA UCAGGGUUAG UCGGGGCCUA AGGAUAAGCC GAAUGGCGAU UCCGAUGGAA GAACCGGUUA AUAUUCCG G UACUGAUACU AGAGGCGAUG UGGUGACGGA GAAGUGACAG UCCGGCCGUC UGACGGAUUA GGCGGUUAAA GGGUGUAGA UGUUAUUCGG GGUAGGCAAA UCCGCCCUCA GAGUCGAACC UGACAGUACC GGAGUACAAG UACGAAGGGA UAAAGGACGU AACCCGGCU CCCAAGAAAA CCCGCUAAGA UAUUUCUUGU GUUACCCGUA CCGUAAACCG ACACAGGUGG UUGGGUUGAG U AUACUAAG GCGCUCGAGA GAUUCGCGGU UAAGGAACUA GGCAAAAUGG UCCUGUAACU UCGGGAGAAA GGACGCCUGU CC CGGGACA GGCCGCAGAA ACCAGGCCCA GGCGACUGUU UAACAAAAAC ACAAGGCUAU GCAAAAAAGC AAUUUGAGGU AUA UAGUCU GACACCUGCC CGGUGCUGGA AGGUUAAGAG GAGGAGUCAU GUCAAGGAGA AGCUCUGAAU UGAAGCCCCA GUAA ACGGC GCCGUAACUA UAACGGUCCC UAAGGUAGCG AAA(5MU)UCCUUG UCGGGUAAGU UCCGAC(5MC)UGC ACGAAUG GU GUAACGAUCU GGGCACUGUC UCAACCGCGA UCUCGGUGAA AUUGUAGUAU CGGUGAAGAU GCCGAUUACC CGCAACGG G ACGAAAAGAC CCCGUGAACC UUUACUAUAG CUUUACAUUG UAUUGGGCAU CAGAUGUGUA GGAUAGGCCG GAGGCAGAG AAGCGGGUAC GCCAGUAUUC GUGGAGUCGA UGUUGAAAUA CGGCCCUUUU GAUGUUUGGG AUACUAACUC GCGGGUGGCG AGGACACUG UAUGGUGGGU AGUUUGACUG (OMG)GGUGGUCGC CUCCAAAAGC GUAACGGAGG CUUCUAAAGG UACCCUC AG GCCGAUUGUA AACCGGUCGC AGAGUGUAAU GGCACAAGGG UGCUUGACUG GGAGACAAAC AAGUCGCACA GGUAGGAA A CUAGAGCAUA GUGAUCCGGU GGUCCCGCAU GGAAGGGCCA UCGCUCAAAG GAUAAAAGGU ACUCCG(2MG)GGA (OMU) AACAGGCU GAUCACUCCC AAGAGUCCAU AUCGACGGAG UGGUUUGGCA CCU(5OC)G(2MA)UGUC GGCUCGUCAC AUCC UGGGG CUGGAGAAGG UCCCAAGGGU UGGGCUGUUC GCCCAUUAAA GUGGCACGCG AGC(PSU)GGGUUC AGAACGUCGU G AGACAGU(PSU) CGGUCUCUAU CUG(H2U)UGUGGG CGCAGGAAAU UUGCGAGGGU CUGACACUAG UGGACGAGGA CCGU GUUGG ACAGACCCCU GGUUUACCGG UUGUACCGCC AGGUGCACCG CCGGGUAUCC ACGUCUGGUA AGGAUAAGUG CUGAA AGCA UCUAAGCACG AAGCCGGCCU CAAGAUAAGA UUUCCAUAAA AAGGGUGGUU AAAGACUAUG ACCUUGAUAG GCUGCA GGU GUAUGAUUGG UAACAAUUAA GCCGAGCAGU ACUAAUAGCC CAAACUUUUG UGCAU

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Macromolecule #11: 5S rRNA

MacromoleculeName: 5S rRNA / type: rna / ID: 11 / Number of copies: 1
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 35.186926 KDa
SequenceString:
UCAGGUGGUU AUAACGUUGG GGAUCCACCU CUUCCCAUUC CGAACAGAGA AGUUAAGCCC AACGGUGCCG AUGGUACUGC GUCACAGUG GGAGAGUAGG ACGCCGCCGA

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Macromolecule #30: 16S rRNA

MacromoleculeName: 16S rRNA / type: rna / ID: 30 / Number of copies: 1
Source (natural)Organism: Porphyromonas gingivalis (bacteria)
Molecular weightTheoretical: 496.728156 KDa
SequenceString: ACAGUGGAGA GUUUGAUCCU GGCUCAGGAU GAACGCUAGC GAUAGGCUUA ACACAUGCAA GUCGAGGGGC AGCAUGAUCU UAGCUUGCU AAGGUUGAUG GCGACCGGCG CACGGGUGCG UAACGCGUAU GCAACUUGCC UUACAGAGGG GGAUAACCCG U UGAAAGAC ...String:
ACAGUGGAGA GUUUGAUCCU GGCUCAGGAU GAACGCUAGC GAUAGGCUUA ACACAUGCAA GUCGAGGGGC AGCAUGAUCU UAGCUUGCU AAGGUUGAUG GCGACCGGCG CACGGGUGCG UAACGCGUAU GCAACUUGCC UUACAGAGGG GGAUAACCCG U UGAAAGAC GGACUAAAAC CGCAUACACU UGUAUUAUUG CAUGAUAUUA CAAGGAAAUA UUUAUAGCUG UAAGAUAGGC AU GCGUCCC AUUAGCUUGU UGGUGAGGUA ACGGCUCA(5OC)C AAGGCGACGA UGGGUAGGGG AACUGAGAGG UUUAUCCCC CACACUGGUA CUGAGACACG GACCAGACUC CUACGGGAGG CAGCAGUGAG GAAUAUUGGU CAAUGGGCGA GAGCCUGAAC CAGCCAAGU CGCGUGAAGG AAGACAGUCC UAAGGAUUGU AAACUUCUUU UAUACGGGAA UAACGGGCGA UACGAGUAUU G CAUUGAAU GUACCGUAAG AAACAGCAUC GGCUAACUCC GUGCCAGCAG CCGCGGUAAU ACGGAGGAUG CGAGCGUUAU CC GGAUUUA UUGGGUUUAA AGGGUGCGUA GGUUGUUCGG UAAGUCAGCG GUGAAACCUG AGCGCUCAAC GUUCAGCCUG CCG UUGAAA CUGCCGGGCU UGAGUUCAGU GGCGGCAGGC GGAAUUCGUG GUGUAGCGGU GAAAUGCAUA GAUAUCACGA GGAA CUCCG AUUGCGAAGG CAGCUUGCCA UACUGCGACU GACACUGAAG CACGAAGGCG UGGGUAUCAA ACAGGAUUAG AUACC CUGG UAGUCCACGC AGUAAACGAU (7MG)AUUACUAGG AGUUUGCGAU AUACCGUCAA GCUUCCACAG CGAAAGCGUU AA GUAAUCC ACCUGGGGAG UACGCCGGCA ACGGUGAAAC UCAAAGGAAU UGACGGGGGC CCGCACAAGC GGAGGAACAU GUG GUUUAA UUCGAUGAUA CGCGAGGAAC CUCAUUUGGG AUUGAAAUGU GGAUGACGGA UGGUGAAAAC CGUCUUCCCU UCGG GGCUU CUAUGUAAGG UGCUGCAUGG UUGUCGCCAG CUCGUGCCGU GAGGUUCGGC UUAAGUGCCA UAAACGAGCG AACCC CACA UCGGUAGUUA CUACAGUUUU CCGCUGAGGA CUCUACCGAG AUGCCGUCGU AAGGCGUGAG GAAGGUGGUG GAUGAC GUC AAAUCAGCAC GGCCCUUACA UCCGGGGCGA CACACGUGUU ACAAUGGGAG GGACAAAGGG CAGCUACCGG GCGACCG GA UGCGAAUCUC UAAACCCUUC CCCAGUUCGG AUCGGAGUCU GCAACUCGAC UCCGUGAAGC UGGAUUCGCU AGUAAUCG C GCAUCAGCCA UGGCGCGGUG AAUACGUCCC GGGGCCUUGU ACACACCG(4OC)C (5MC)GUCAA(2MG)CCA UGGGAGU CG GGGGUACCUG AAGGGCGAAC CGCAAGGGGG CGCACUAGGG UAAACCCGGU GACUGGGGCU AAGUCG(UR3)AAC AAGG UAGCC GUACCGG(MA6)(MA6)G GUGCGGCUGG AACCCUCCUU UCU

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Macromolecule #49: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 49 / Number of copies: 128 / Formula: MG
Molecular weightTheoretical: 24.305 Da

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Macromolecule #50: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 50 / Number of copies: 1 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

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Macromolecule #51: POTASSIUM ION

MacromoleculeName: POTASSIUM ION / type: ligand / ID: 51 / Number of copies: 43 / Formula: K
Molecular weightTheoretical: 39.098 Da

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Macromolecule #52: SODIUM ION

MacromoleculeName: SODIUM ION / type: ligand / ID: 52 / Number of copies: 14
Molecular weightTheoretical: 22.99 Da

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Macromolecule #53: water

MacromoleculeName: water / type: ligand / ID: 53 / Number of copies: 855 / Formula: HOH
Molecular weightTheoretical: 18.015 Da
Chemical component information

ChemComp-HOH:
WATER

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

BufferpH: 7.5
GridModel: Quantifoil R2/2 / Material: COPPER / Mesh: 300 / Support film - Material: CARBON / Support film - topology: CONTINUOUS
VitrificationCryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK IV

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Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 1.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 1.5 µm / Nominal defocus min: 0.5 µm
Sample stageSpecimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER / Cooling holder cryogen: NITROGEN
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

CTF correctionType: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: NONE
Final reconstructionResolution.type: BY AUTHOR / Resolution: 3.0 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: RELION / Number images used: 129576
Initial angle assignmentType: MAXIMUM LIKELIHOOD
Final angle assignmentType: MAXIMUM LIKELIHOOD

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