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- EMDB-47628: Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome (C... -

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Basic information

Entry
Database: EMDB / ID: EMD-47628
TitleCryo-EM structure of the Pyrobaculum calidifontis 70S ribosome (Composite Map)
Map dataPyrobaculum calidifontis 70S ribosome (composite map)
Sample
  • Complex: 70S ribosome
    • Complex: 50S Subunit
      • RNA: x 2 types
      • Protein or peptide: x 36 types
    • Complex: 30S subunit
      • RNA: x 1 types
      • Protein or peptide: x 29 types
  • Ligand: x 4 types
KeywordsRibosome / Translation / Hibernation / RNA
Function / homology
Function and homology information


ribonuclease P activity / tRNA 5'-leader removal / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit biogenesis / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosome biogenesis / large ribosomal subunit / ribosomal small subunit biogenesis / ribosomal small subunit assembly / small ribosomal subunit ...ribonuclease P activity / tRNA 5'-leader removal / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit biogenesis / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosome biogenesis / large ribosomal subunit / ribosomal small subunit biogenesis / ribosomal small subunit assembly / small ribosomal subunit / 5S rRNA binding / small ribosomal subunit rRNA binding / ribosomal large subunit assembly / large ribosomal subunit rRNA binding / cytosolic small ribosomal subunit / cytosolic large ribosomal subunit / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding / structural constituent of ribosome / ribosome / translation / ribonucleoprotein complex / mRNA binding / RNA binding / zinc ion binding / cytosol / cytoplasm
Similarity search - Function
Ribosomal protein L14e / : / Small zinc finger protein HVO_2753-like, zinc-binding pocket / Small zinc finger protein HVO_2753-like / Small zinc finger protein HVO_2753-like, Zn-binding pocket / Ribosomal protein L40e, archaeal / Ribosomal protein L14, KOW motif / Ribosomal protein S9, archaeal / Ribosomal protein S13, archaeal / Ribosomal protein S17, archaeal ...Ribosomal protein L14e / : / Small zinc finger protein HVO_2753-like, zinc-binding pocket / Small zinc finger protein HVO_2753-like / Small zinc finger protein HVO_2753-like, Zn-binding pocket / Ribosomal protein L40e, archaeal / Ribosomal protein L14, KOW motif / Ribosomal protein S9, archaeal / Ribosomal protein S13, archaeal / Ribosomal protein S17, archaeal / Ribosomal protein S6e, archaeal / Ribosomal protein S4, archaeal / Ribosomal protein S12, archaea / Ribosomal protein S3, archaeal / 30S ribosomal protein S3Ae / : / Ribosomal protein S7, archaeal / Ribosomal protein S19e, archaeal / Ribosomal protein S11, archaeal / Ribosomal protein S2, archaeal / Ribosomal protein S14, type Z, archaeal / Ribosomal protein S8e, archaeal / Ribosomal protein L19e, archaeal / Ribosomal protein L30, archaeal / Ribosomal protein L6P, archaea / Ribosomal protein L14P, archaeal / Ribosomal protein L21e, archaeal / Ribosomal protein L18e, archaea / Ribosomal protein L10e, archaea / Ribosomal protein L3, archaeal / Ribosomal protein L4, archaea / Ribosomal protein L5, archaeal / Ribosomal protein L32e, archaeal / : / : / DJ-1/PfpI / DJ-1/PfpI family / Ribosomal protein L7Ae, archaea / Ribosomal protein L13e, conserved site / Ribosomal protein L13e signature. / Ribosomal protein L30e / Ribosomal L15/L27a, N-terminal / Ribosomal protein L13e / Ribosomal protein L2, archaeal-type / Ribosomal protein L23 / : / Ribosomal protein L30e signature 2. / Ribosomal protein L30e, conserved site / Ribosomal protein L13e / Ribosomal protein L30/YlxQ / Class I glutamine amidotransferase-like / metallochaperone-like domain / TRASH domain / Ribosomal protein S26e / Ribosomal protein S26e superfamily / Ribosomal protein S26e / Ribosomal protein S19e, conserved site / Ribosomal protein S19e signature. / Ribosomal protein S5, eukaryotic/archaeal / Ribosomal protein L10e, conserved site / Ribosomal protein L10e signature. / Ribosomal protein L38e / Ribosomal protein L38e superfamily / Ribosomal L38e protein family / Ribosomal protein L10e / Ribosomal protein L24e, conserved site / Ribosomal protein L24e signature. / Ribosomal protein S10, eukaryotic/archaeal / Ribosomal protein S17e, conserved site / Ribosomal protein S17e signature. / Ribosomal protein S25 / S25 ribosomal protein / Ribosomal protein S30 / Ribosomal protein S30 / Ribosomal protein L34e, conserved site / Ribosomal protein L34e signature. / Ribosomal protein S2, eukaryotic/archaeal / 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a / Ribosomal L40e family / Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A / Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A / Ribosomal protein 60S L18 and 50S L18e / Ribosomal_L40e / Ribosomal protein L40e / Ribosomal protein L40e superfamily / : / Ribosomal protein S27e signature. / 40S ribosomal protein S29/30S ribosomal protein S14 type Z / Ribosomal protein S3, eukaryotic/archaeal / Ribosomal protein S19e / Ribosomal protein S19e / Ribosomal_S19e / Ribosomal protein L39e, conserved site / Ribosomal protein L39e signature. / 60S ribosomal protein L19 / : / Ribosomal protein L13, eukaryotic/archaeal / Ribosomal protein S19A/S15e / Ribosomal protein L34Ae / Ribosomal protein L34e
Similarity search - Domain/homology
Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL2 / Small ribosomal subunit protein eS17 / Small ribosomal subunit protein uS2 / Large ribosomal subunit protein eL14 / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein eL19 / Large ribosomal subunit protein eL32 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS14 ...Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL2 / Small ribosomal subunit protein eS17 / Small ribosomal subunit protein uS2 / Large ribosomal subunit protein eL14 / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein eL19 / Large ribosomal subunit protein eL32 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS14 / SSU ribosomal protein S30E / Small ribosomal subunit protein eS24 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein eL24 / Large ribosomal subunit protein eL8 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein uL22 / DJ-1/PfpI domain-containing protein / Large ribosomal subunit protein eL13 / LSU ribosomal protein L38E / Small ribosomal subunit protein uS19 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL30 / Small ribosomal subunit protein uS5 / Small ribosomal subunit protein eS6 / Large ribosomal subunit protein eL43 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein eL39 / Small ribosomal subunit protein eS19 / Small ribosomal subunit protein eS27 / Large ribosomal subunit protein uL15 / SSU ribosomal protein S25E / SSU ribosomal protein S26E / Large ribosomal subunit protein eL34 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein eS1 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL23 / 50S ribosomal protein L15e / PaREP1 domain containing protein / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein eL21 / Small ribosomal subunit protein eS8 / Small ribosomal subunit protein eS4 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein uL14 / Small ribosomal subunit protein uS11 / Large ribosomal subunit protein eL31 / Large ribosomal subunit protein eL20 / Large ribosomal subunit protein eL40 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein eL30 / Small ribosomal subunit protein uS12 / Large ribosomal subunit protein eL18 / Large ribosomal subunit protein uL13 / Small ribosomal subunit protein uS9 / Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein / Large ribosomal subunit protein eL37
Similarity search - Component
Biological speciesPyrobaculum calidifontis JCM 11548 (archaea)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.36 Å
AuthorsNissley AJ / Cate JHD
Funding support United States, 1 items
OrganizationGrant numberCountry
National Science Foundation (NSF, United States)CHE-2002182 United States
CitationJournal: Nat Microbiol / Year: 2025
Title: Structure of an archaeal ribosome reveals a divergent active site and hibernation factor.
Authors: Amos J Nissley / Yekaterina Shulgina / Roan W Kivimae / Blake E Downing / Petar I Penev / Jillian F Banfield / Dipti D Nayak / Jamie H D Cate /
Abstract: Ribosomes translate mRNA into protein. Despite divergence in ribosome structure over the course of evolution, the catalytic site, known as the peptidyl transferase centre (PTC), is thought to be ...Ribosomes translate mRNA into protein. Despite divergence in ribosome structure over the course of evolution, the catalytic site, known as the peptidyl transferase centre (PTC), is thought to be nearly universally conserved. Here we identify clades of archaea that have highly divergent ribosomal RNA sequences in the PTC. To understand how these PTC sequences fold, we determined cryo-EM structures of the 70S and 50S ribosomes to 2.4 Å and 2 Å, respectively, from the hyperthermophilic archaeon Pyrobaculum calidifontis. PTC sequence variation leads to the rearrangement of key base triples, and differences between archaeal and bacterial ribosomal proteins enable sequence variation in archaeal PTCs. Finally, we identify an archaeal ribosome hibernation factor, Dri, that differs from known bacterial and eukaryotic hibernation factors and is found in multiple archaeal phyla. Overall, this work identifies factors that regulate ribosome function in archaea and reveals a larger diversity of the most ancient sequences in the ribosome.
History
DepositionOct 31, 2024-
Header (metadata) releaseNov 20, 2024-
Map releaseNov 20, 2024-
UpdateJul 30, 2025-
Current statusJul 30, 2025Processing site: RCSB / Status: Released

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Structure visualization

Supplemental images

emd_47628.png

Downloads & links

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Map

FileDownload / File: emd_47628.map.gz / Format: CCP4 / Size: 857.4 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationPyrobaculum calidifontis 70S ribosome (composite map)
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
0.83 Å/pix.
x 608 pix.
= 504.214 Å		0.83 Å/pix.
x 608 pix.
= 504.214 Å		0.83 Å/pix.
x 608 pix.
= 504.214 Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 0.8293 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.215
Minimum - Maximum-0.61848336 - 1.5264345
Average (Standard dev.)-0.000000000048487 (±0.049015474)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions608608608
Spacing608608608
CellA=B=C: 504.2144 Å
α=β=γ: 90.0 °

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Supplemental data

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Sample components

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Entire : 70S ribosome

EntireName: 70S ribosome
Components
  • Complex: 70S ribosome
    • Complex: 50S Subunit
      • RNA: 5S rRNA
      • RNA: 23S rRNA
      • Protein or peptide: Large ribosomal subunit protein uL2
      • Protein or peptide: Large ribosomal subunit protein uL3
      • Protein or peptide: Large ribosomal subunit protein uL4
      • Protein or peptide: Large ribosomal subunit protein uL5
      • Protein or peptide: Large ribosomal subunit protein uL6
      • Protein or peptide: Large ribosomal subunit protein eL8
      • Protein or peptide: Large ribosomal subunit protein uL13
      • Protein or peptide: Large ribosomal subunit protein eL13
      • Protein or peptide: Large ribosomal subunit protein uL14
      • Protein or peptide: Large ribosomal subunit protein eL14
      • Protein or peptide: Large ribosomal subunit protein uL15
      • Protein or peptide: 50S ribosomal protein L15e
      • Protein or peptide: Large ribosomal subunit protein uL16
      • Protein or peptide: Large ribosomal subunit protein uL18
      • Protein or peptide: Large ribosomal subunit protein eL18
      • Protein or peptide: Large ribosomal subunit protein eL19
      • Protein or peptide: Large ribosomal subunit protein eL20
      • Protein or peptide: Large ribosomal subunit protein eL21
      • Protein or peptide: Large ribosomal subunit protein uL22
      • Protein or peptide: Large ribosomal subunit protein uL23
      • Protein or peptide: Large ribosomal subunit protein uL24
      • Protein or peptide: Large ribosomal subunit protein eL24
      • Protein or peptide: Large ribosomal subunit protein uL29
      • Protein or peptide: Large ribosomal subunit protein uL30
      • Protein or peptide: Large ribosomal subunit protein eL30
      • Protein or peptide: Large ribosomal subunit protein eL31
      • Protein or peptide: Large ribosomal subunit protein eL32
      • Protein or peptide: Large ribosomal subunit protein eL34
      • Protein or peptide: Large ribosomal subunit protein eL37
      • Protein or peptide: LSU ribosomal protein L38E
      • Protein or peptide: Large ribosomal subunit protein eL39
      • Protein or peptide: Large ribosomal subunit protein eL40
      • Protein or peptide: eL42
      • Protein or peptide: Large ribosomal subunit protein eL43
      • Protein or peptide: DJ-1/PfpI domain-containing protein
      • Protein or peptide: PaREP1 domain containing protein
    • Complex: 30S subunit
      • RNA: 16S rRNA
      • Protein or peptide: Small ribosomal subunit protein eS1
      • Protein or peptide: Small ribosomal subunit protein uS2
      • Protein or peptide: Small ribosomal subunit protein uS3
      • Protein or peptide: Small ribosomal subunit protein uS4
      • Protein or peptide: Small ribosomal subunit protein eS4
      • Protein or peptide: Small ribosomal subunit protein uS5
      • Protein or peptide: Small ribosomal subunit protein eS6
      • Protein or peptide: Small ribosomal subunit protein uS7
      • Protein or peptide: Small ribosomal subunit protein uS8
      • Protein or peptide: Small ribosomal subunit protein eS8
      • Protein or peptide: Small ribosomal subunit protein uS9
      • Protein or peptide: Small ribosomal subunit protein uS10
      • Protein or peptide: Small ribosomal subunit protein uS11
      • Protein or peptide: Small ribosomal subunit protein uS12
      • Protein or peptide: Small ribosomal subunit protein uS13
      • Protein or peptide: Small ribosomal subunit protein uS14
      • Protein or peptide: Small ribosomal subunit protein uS15
      • Protein or peptide: Small ribosomal subunit protein uS17
      • Protein or peptide: Small ribosomal subunit protein eS17
      • Protein or peptide: Small ribosomal subunit protein uS19
      • Protein or peptide: Small ribosomal subunit protein eS19
      • Protein or peptide: Small ribosomal subunit protein eS24
      • Protein or peptide: SSU ribosomal protein S25E
      • Protein or peptide: SSU ribosomal protein S26E
      • Protein or peptide: Small ribosomal subunit protein eS27
      • Protein or peptide: eS28
      • Protein or peptide: SSU ribosomal protein S30E
      • Protein or peptide: aS35
      • Protein or peptide: Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein
  • Ligand: SPERMINE
  • Ligand: MAGNESIUM ION
  • Ligand: ZINC ION
  • Ligand: water

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Supramolecule #1: 70S ribosome

SupramoleculeName: 70S ribosome / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#68
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)

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Supramolecule #2: 50S Subunit

SupramoleculeName: 50S Subunit / type: complex / ID: 2 / Parent: 1 / Macromolecule list: #1-#2, #4-#39
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)

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Supramolecule #3: 30S subunit

SupramoleculeName: 30S subunit / type: complex / ID: 3 / Parent: 1 / Macromolecule list: #3, #40-#68
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)

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Macromolecule #1: 5S rRNA

MacromoleculeName: 5S rRNA / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 41.803953 KDa
SequenceString:
GCCCCUAACC CGGCCAUAGG CGCCGGUGCU ACACCCGGUC UCAUCAGAAC CCGGAAGUUA AGGCCGGCGC CGCGCUCGGG AGUACUGGG CUCCGCGAGG GCCCGGGAAA CCGGCGUGCU GGGAGGGGGC

GENBANK: GENBANK: CP000561.1

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Macromolecule #2: 23S rRNA

MacromoleculeName: 23S rRNA / type: rna / ID: 2 / Number of copies: 1
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 984.007875 KDa
SequenceString: UAGGCAAAGC CGCCCGGUGG AUGGCUCGGC UCGGGCG(5MC)CG AAGAAGGGCG UGGCAAGCUG CGAUAAGCCC GGGGUA GC(B8T) GCAGGCAGGC UUAGAACCCG GGAUCCCCGA AUGGGGCUUC CUGCCGGGGC CGAAUAGGCC CCGGCGCCCC GUA AGGGGC ...String:
UAGGCAAAGC CGCCCGGUGG AUGGCUCGGC UCGGGCG(5MC)CG AAGAAGGGCG UGGCAAGCUG CGAUAAGCCC GGGGUA GC(B8T) GCAGGCAGGC UUAGAACCCG GGAUCCCCGA AUGGGGCUUC CUGCCGGGGC CGAAUAGGCC CCGGCGCCCC GUA AGGGGC GGGAACGCGG GGAAAGGAAA CAUCUUAGUA CCCGCAGGAA GGGAAGCCAA CAGGGACCCC CUGAGUAGGG GCGA CCGAA AGGGGGAUAG CCCAAACCAA AUCCUCGCGG GACAACCGUG GGGAGAUGUG GGGCUUGGGC CCGGGCAACC GCCGG CGGG CGGUAGCCGA AGUGGGCUGG AAUGCCCCGC CGUAGAGGGU GAUAGCCCCG UAGGCGAAAC CGCCCGUGGC GGAGUC CCG GGGUCCCGGA GUACCUCGGC UUAGUUUUGC CGGGGGAACG CGCCGGCCAC UGGCCGGCAA GGCUAAGCAC GUCCCGA GU CCGAUAGCGC ACUAGUA(OMC)(OMC)G UGAGGGAAAG CUGAAAAGAA CCCCGGAAGG GGGGUGAAAA GAGCCUGAAA CCGGGCGGC UACAGUGGGG CAGGCCCGAA AGGAUGCCCC CUCCCGAAGG AAACCCCGGU GACGGGGGAG UACGAGGGAG G GGGUCCAG GGUCUGCCCU UACGUCUAGA AACACGGGCC GGGGAGUUCA (OMC)GGCCGUGGC GAGCCUAAGG GGUUCAAC C CCGGAGGCGU AGGGAAACCG ACAGCCCGCA GCGGGGCAAC CCGCGAGGGG CGGGGUCUUA AAGGGCCCGU AGUCACGGC CGUGAGACCA GAAACCGGGC GAUCUAGCCC UGGGCAGGGU GAAGCGGGGC GAAAGCCCCG UGGAGGCCCG AAGGGGUUCU GAUGUGCAA AU(OMC)GU(OMU)CCCA UGACCUGGGG CUAGGGGCAA AA(OMG)ACCAA(OMU)C AAGCCCGGUG AUAGC UGGU UCCCCCCGAA GCGGGUCUCA GCCCGGCCUC CCCGGAGGCG GCCGGCGGGG UAGAGUACUG AUCGGGGGUG CGGGAG CCG AAAGGCUCCG GCCCCCGGUC AAACUCCGAA CCUGCCAGCG CCGUAGAAGG GGGGAGGCGG GGGCGGUGGG GUAAGCC UC CGCUCCGAGA CGGGAACAAC CGAGACCGGG GUUAAGGCCC CCAAGUGCGG GCUUAGUGUC AAUCUAAAAG GGCGUCCC C CGCCCAAGAC AGCGGGGCCG UGGGCCUAAC AGCAGCCAUC GGCUAAGCAA CGCGUAACAG CGGACCCGCC GAGGCGGGG GGCCCCGAAG AUGUACAGGG ACUAAGCCCG CCGCCGAGAC CCCGGCCCGC GGGCCGUUGG CCCGCGUGGG GUAGGGGGGC GCGGCCGUG GGGCAGAAGC CGGGCCGUGA GGUCCGGUGG ACCCGCGGCC GACGAAGAUC CCGGCGGUAG UAGCAGCGAA G AGGGGUGA GAAGCCCCUC CGCCGGAAAG GACCAGGGUU UCCUGGCAAC UUCAAUAGGC CAGGAGUUAG CCGGUCCUAA GG CGGGGCC UAAUAGGCAC CCGCCGAAAG GGAAACGGGU UAAUAUUCCC GUGCCGCGGG GGUAGGUUCU GCGGCAACGC AGG CCCCGU CCCCGACGCC UCGGGAUAGG GCGGGCGGGA CUGCCGUCCC GCUUAACCGU CGAAGGCCGG GGAGUGCCGU AAUG GCGAG AACCGGCCGA AGGCGGGAAU AGCCGGGGGU UUCCCCGGUC CGCCCGACUC CUGGGGCCCG UGAAAAGGGG ACGGG GAAC GAGCCCCCGC GCCCGUACCG AGAACCGACG CAGGUGCUCC UGGGUGAGAA GCCCAAGGCG GCUCGGGUGA CCCCGG GCC AGGGAACU(OMC)G GCAAAUUGGC CCCGUAACUU CGGGAGAAGG GGUGCCUGCG GUCUUGGGGU AUACCCCCGG GAC CGCAGG UCGCAGUGGC AAGGGGGACC UGAC(PSU)GUUUA ACAAAAACAU AGGUCCCCGC GAGCCCGUAA (OMG)G (OMG)UGUGUA C(OMG)GGGGCUGA AUCCU(OMG)GCCA (OMC)UGGCGGUAC G(PSU)GA(A2M)CCCCG GGUACAACC GGGCGA(A2M)GCG C(4AC)(OMG)(OMC)UGAAGG CCGGGGGUAA CUCUGACCC(PSU) CUUAAGGUAG C(5MC)AA (A2M)UGCC UU(OMG)CCGG(OMG)UA AGU(OMU)CCGGCG UGCA(OMU)GAAUG GAUCAACGA(OMG) (OMG)UCCCCA CU GU(OMC)(OMC)CGGCCC GGGGCCCGGC GAACCCACCU (OMC)CAGGUGCAC AG(OMU)CCUGGGA CCCCCGACGG GG C(OMG)AGAAG UCCCUAUGGA GCUUCACAGC AGCCUGUCGU UGCGGGGGGG CGGGGGGUGC AGAGCGUAGG UGGGAGCGA UGAAACGGGG UCUCCGGGCC CCGUGGAUGC GACCCUGGAA CACCACCCAC UCUCCGCCCC UCCGCUUACC CGCCGCAAGG CGGGGACAG CGGCAGGCGG GCUGUUCGGC UG(OMG)GGC(OMG)GCA CACCCCUGAA AAGAUAUC(OMG)G GGGUGCCCA AAGCUCGGC(OMU) CAGGCGGGUC AGAAAUCCGC CGUAGAGUGU AAGGGCAAAA GCCGGGCUGA CUGGGCCCUU GAACGC AAG GGGCCCAGGC GGGAAACCGG GGCCUAGAGA ACGCUCGUGC CCCCACCAGU GGGGGCCGG(OMG) (OMC)AUGACAGA AAAGUUAC(OMC)C UAGGAAUAAC CGGC(PSU)CG(OMU)CG CGGGUGAGAG UCCCCAUCGA CCCC(OMG)CGGUU (PSU)(OMG)G(PSU)ACCCA GACGUCG(OMU)(OMC)(PSU) CU(OMU)CCCAUCC UGGCGGUGCA GCAGCCGCCA AGG GUGGGG C(OMU)(OMG)CCCGCCC AUUAAAGGGG AACGUG(A2M)GAU GGG(UR3)UCAGA(OMC) CG(OMU)CGCGAGA CAGGU(OMC)GGU CUCUACCUGU CGGGGGCGCU GGCCGCCUGA GGGGAAGGUG CCCUCAGUAC GAGAGGAACG GGGCGCC GC GGCCUCUAGU GUACCGGUUG UCCGGCAGGG CACUGCCGGG CAGCCACGCC GUGGGGGA(OMU)A ACCGCUGAAA GCAU CUAAG CGGGAAGCCC UC(OMC)(OMC)CGAGAC GAGGCGGCCG UUGCCCUGGG GGCAACCCCG GGGCACGAGG GCUCC (B8T)GUA GAAGACGGGG UUGAUGGGGG GGCGGUGUAA CCCCCGAGGG UUUCCCGAGG GGAGAGCCGG CCCCUCCCAA UC GCCCGAG CGU(G7M)C

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Macromolecule #3: 16S rRNA

MacromoleculeName: 16S rRNA / type: rna / ID: 3 / Number of copies: 1
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 487.519906 KDa
SequenceString: AAAC(4AC)G(OMG)UUG AUCC(OMU)GCC(OMG)G ACCCGACCGC UAUCGGGGU(A2M) GGGCUAAGCC AUGCGAGUCG CGCGCCCGG GGGCGCCCGG GAGCGGCGCA CGGCUCAGUA ACACGUGCCU AACCUAACCU CGGGAGGGGG ACACCCCCGG G AAACUGGG ...String:
AAAC(4AC)G(OMG)UUG AUCC(OMU)GCC(OMG)G ACCCGACCGC UAUCGGGGU(A2M) GGGCUAAGCC AUGCGAGUCG CGCGCCCGG GGGCGCCCGG GAGCGGCGCA CGGCUCAGUA ACACGUGCCU AACCUAACCU CGGGAGGGGG ACACCCCCGG G AAACUGGG GUCAAUCCCC CAUAGGGGAA GGGCGCUGGA AGGCCCCUUC CCCGAAAGGG CUGGCGGCCG AUCCGCCGCC AG UCGCCCG AGGGUGGGGG CACGGCCCAU CAGGUAGUUG GCGGG(PSU)UAAA GGCCCGCCAA GCCGAAGACG GGUAGGGGC GGUGAGAGCC GCGAGCCCCG AGAUGGGCAC UGAGACAAGG GCCCAGGCCC UACGGGGUGC AGCAGGCGCG AAUACUCCGC AAUGCGGGC AACCGCGACG GGGCUACCCC GAGUGCCGGG CGAAGAGCCC GGCUUUUGCC CGGUCUAAAA AGCCGGGAGA A UAAGC(OMG)GG (OMG)G(OMG)CAAGUCU (OMG)GUGUCAGCC GCCG(OMC)GGUAA U(A2M)CCAGCUCC GCG(M7A) GU(OMG)GU (OMC)GGGGUGUUU ACUGGGCUUA AAGCGCCCGU AGCCGGCCCG GCAAGUCGCU CCUGA(A2M)AU(OMC) CCCGGGCUCA ACCCGGGGGC CGGGGGCGAU ACUGCCGGGC UAGGGGGCGG GAGAGGCCGC CGGUACUCCG GGGGUAGGGG CGAAAUCCG UUAAUCCCCG GA(OMG)GACCACC AGUGGCGAAA GCGGGCGGCC AGAACGCGCC CGACGGUGAG GGGCGAA AG CCGGGGGAGC AAAGGGGAUU AGAUACCCCU GUAGUCCCGG CCGUAAACGA UGCGGGCUAG CUGUCGGUCG GGCUUAGG G CCCGGCCGGU GGCGAAGGGA AACCGUUAAG CCCGCCGCCU GGGGAGUACG GCCGCAAGGC UGAAACU(OMU)A(A2M) (A2M)GGAAUUGG CGGGGGGGCA CCACAAG(OMG)G(OMG) UGAAGCUUGC GGCUUAAUUG GAGUCAACGC CGGAAACCU CACCCGGGGC GACAGCAGGA UGAAGGCCAG GCUAACGACC UUGCCGGACG AGCUGAGAGG AGGUGCAUGG CCGUCGUCAG CUCGUG(OMC)(B8T)G UGAGGUGU(OMC)C GGUUAAGUCC GGC(A2M)ACGAGC GAGACCCCCG CCCCUAGUUG CUACC CCUC CCUACGGGGA GGGGGGCACA CUAGGGGGAC UGCCGGCGUA AGCCGGAGGA AGGAGGGGGC CACGGCA(OMG)GU CA GUAUGCC CCGAAACCC(OMC) GGGGCUGCAC GCGAGCU(OMG)CA AUGGC(OMG)(OMG)(OMG)GA CAGCGGGAUC CGA CCCCGA AAGGGGGAGG CAAUCCCGUA AACCCCGCCC CAGUAGGGAU CGAGGGCUGC AACUC(OMG)CCCU CGUGAACGUG GAAUCCCUA GUAAC(4AC)GCGU GUCACCAACG CGCGGUGAAU ACGUCCCUGC CCCUUGCACA CACCG(OMC)CCGU CGC ACCACC CGAGGGAGCC CUCUGCGAGG CCCCUCGCCG CAAGGUGGGG GGACGAGCAG GGGGCUCCCA AGGGGGGUGA AGUC GUA(6MZ)C AAGGUAGC(B8T)G UAGGGG(MA6)(MA6)CC UGCGGCUGGA UCACCUCC

GENBANK: GENBANK: NR_040922.1

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Macromolecule #4: Large ribosomal subunit protein uL2

MacromoleculeName: Large ribosomal subunit protein uL2 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 26.240348 KDa
SequenceString: MGKRILVQRR GRGGSQFRSP SWKRDGPVRY PPNISGRGIV VEILHEPGLN APVAKIRMEN GVEFFNYAAE GLYVGQVIQV GPDAPPAVG NVLPLGKIPE GTMVFNVEKR FGDGGKFARS GGTYALVIGQ RPEENKTIVR LPSGRVIEVD ARGRATIGIV A GGGRVEKP ...String:
MGKRILVQRR GRGGSQFRSP SWKRDGPVRY PPNISGRGIV VEILHEPGLN APVAKIRMEN GVEFFNYAAE GLYVGQVIQV GPDAPPAVG NVLPLGKIPE GTMVFNVEKR FGDGGKFARS GGTYALVIGQ RPEENKTIVR LPSGRVIEVD ARGRATIGIV A GGGRVEKP FVKAGKKYHR ARAKSWKYPT VRGKAMSPYA HPHGGGSHQK GGTPVPKTAP PGQKVGFIGS RCTGRGCVRA RA QQKQ

UniProtKB: Large ribosomal subunit protein uL2

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Macromolecule #5: Large ribosomal subunit protein uL3

MacromoleculeName: Large ribosomal subunit protein uL3 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 37.240543 KDa
SequenceString: MGLKINRPRR GSMGVYPRKR AADIVPRVRT WPEVNLGKPT LLGFAAYKAG MLHAVVVDDR PTSPLYGKEV VKAVTVLDAP PLYVAAVRL YTLDPTNGYK VAVGEAWVSE PPADLRRVLT LPEKFDTEKQ LKALEEYRDV AVDVRVLVAT QPRLSGIGKK T PEVLEIPV ...String:
MGLKINRPRR GSMGVYPRKR AADIVPRVRT WPEVNLGKPT LLGFAAYKAG MLHAVVVDDR PTSPLYGKEV VKAVTVLDAP PLYVAAVRL YTLDPTNGYK VAVGEAWVSE PPADLRRVLT LPEKFDTEKQ LKALEEYRDV AVDVRVLVAT QPRLSGIGKK T PEVLEIPV GGVPSIDERI NFAISLLGKT VSPKDVFTPG QLVDVIAVTK GKGYQGVVKR FGVTILPRWH KHRKGHRRTG TI GPQAPAL MFTQPRPGQM GFHQRTEYNK RILKIGDNGA EITPKSGFPH YGVIKGPYIL LQGSVPGARK RLVVLRYPVR PPK KAPPAA EPQVVWVSSQ SI

UniProtKB: Large ribosomal subunit protein uL3

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Macromolecule #6: Large ribosomal subunit protein uL4

MacromoleculeName: Large ribosomal subunit protein uL4 / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 31.602059 KDa
SequenceString: MGAVVKELLK FKLLDLSPYI KPAEERPPEA LKVYDVNGQY MADIETPIHF YEPVRPDLIR RAYLSALSAR FQPKGVYEGA GKEHSCESF GVGLGIARIP RYKGHLWPRG CFAPNTRGGR RAHPPRPEKK LHEEINWKEK NLAIRSAIAA TAYKSWVAAR G HMVEKVPS ...String:
MGAVVKELLK FKLLDLSPYI KPAEERPPEA LKVYDVNGQY MADIETPIHF YEPVRPDLIR RAYLSALSAR FQPKGVYEGA GKEHSCESF GVGLGIARIP RYKGHLWPRG CFAPNTRGGR RAHPPRPEKK LHEEINWKEK NLAIRSAIAA TAYKSWVAAR G HMVEKVPS LPLVVSGDAE KIAKAKEAKK LFEVLGLWPD VERAAEGVKI RAGKGKMRGR RYKEPKSVLV VVSELDVPLI GA VRNFPGV DVVPVSHLNM LVLAPGGVPG RLTLWTATAV ERLKGLFL

UniProtKB: Large ribosomal subunit protein uL4

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Macromolecule #7: Large ribosomal subunit protein uL5

MacromoleculeName: Large ribosomal subunit protein uL5 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 20.156908 KDa
SequenceString:
MKWKELVLVK DHPMKRVYIE KVVVNIGVGT GGERLEKAAN LLRELTGAEP SLRRAKRSIK DFGIRKGEPI GVAVTLRRDK AVEFLMRAL QAVGNRIKRS SFDERGNVCF GIKEHIMLPG VKYDPAVGIW GMDVCVRLAK PGLRVQLRRR RRSKVGKGQL V TREEAVEF FQKVLGVQVD

UniProtKB: Large ribosomal subunit protein uL5

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Macromolecule #8: Large ribosomal subunit protein uL6

MacromoleculeName: Large ribosomal subunit protein uL6 / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 21.663471 KDa
SequenceString: MHVVYAVEEV PIPDGVKVAI EKTGPFDYVV KVKGPLGELV KEFKNTPVIM SLSDGKVVLE VLNAKKREYA LLGTYKGILK NMFLGVTKG WRYKLKVIYT HFPMLVKVQG NQLTIENFLG RKSKIVLEIP KGVKVEVKGK EDIVVEGIDR ELVSQFAAAI Q AATELRGE ...String:
MHVVYAVEEV PIPDGVKVAI EKTGPFDYVV KVKGPLGELV KEFKNTPVIM SLSDGKVVLE VLNAKKREYA LLGTYKGILK NMFLGVTKG WRYKLKVIYT HFPMLVKVQG NQLTIENFLG RKSKIVLEIP KGVKVEVKGK EDIVVEGIDR ELVSQFAAAI Q AATELRGE EKPSPHGREG GLGVVDGIYV VGYEHVKA

UniProtKB: Large ribosomal subunit protein uL6

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Macromolecule #9: Large ribosomal subunit protein eL8

MacromoleculeName: Large ribosomal subunit protein eL8 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 16.013695 KDa
SequenceString:
MAVTIDPKTF YANPLPGKPF YVRFEVPSDV AEKALEILSI ARQTGKIKKG TNETTKAVER GLAKLVLIAE DVDPPEVVAH LPLLCEEKK VPYVYVPSKE KLGKAAGINV AAAAAVVIEA GQAAGELEAL VNKINEIRAK HGLNAIPVRR

UniProtKB: Large ribosomal subunit protein eL8

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Macromolecule #10: Large ribosomal subunit protein uL13

MacromoleculeName: Large ribosomal subunit protein uL13 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 21.736996 KDa
SequenceString:
MIVKKVLDLS QIPEKGEIVI DAEGHIMGRL ASYVAKILLS KPELRVVVVN AEKLVVTGDR KMVVEWFMRK ISEWRTHYNP EKAGPKIPR RPDRVFKRVV RGMLPKKVES GRDALKRLRV YMSIPLDFIQ RRRLVLYEVP AAKLRVRPLM QFVTLEEVWR S IDPAAWEK WNKAKEVWAK KIKQATSG

UniProtKB: Large ribosomal subunit protein uL13

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Macromolecule #11: Large ribosomal subunit protein eL13

MacromoleculeName: Large ribosomal subunit protein eL13 / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 17.939125 KDa
SequenceString:
MIPKPVVQVP RSIKSGGVTK WKEGRGFSLG ELKEVGLNAE QARLLGLPVD TRRDSVWPQN VEALRKWLIE VLEGKATPPE PTLPKVVKV KRKRGRAFRG LTSAGRRSRG LISTRFRETH NYKFKKKAKE RRLKKRHEAT KGLGNVLRIS RIINESKE

UniProtKB: Large ribosomal subunit protein eL13

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Macromolecule #12: Large ribosomal subunit protein uL14

MacromoleculeName: Large ribosomal subunit protein uL14 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 15.768449 KDa
SequenceString:
MAKRGGKRTV GVPYRFHVTP GIFMNSLVPV ADNSGAKLVR VIGVVGHYSK SVHRRIPGAG VGDMVVVVVR EGKPELRKQI FRAIVVRQR RPYRRPDGTW VAFEDNAVVI VTPEGDPKGS EIHGPVAMEA TLRWPTIANL ASIVV

UniProtKB: Large ribosomal subunit protein uL14

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Macromolecule #13: Large ribosomal subunit protein eL14

MacromoleculeName: Large ribosomal subunit protein eL14 / type: protein_or_peptide / ID: 13 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 11.470542 KDa
SequenceString:
MVKVIDVGRV VVKVLGREAG RKAVVVDIVD ENYVVITGPK SLSGVRRRRV NINHIEPTDK KIEIKKGASD EEVLKALEAA GLVEYMKER VKPKLFEITP ADVK

UniProtKB: Large ribosomal subunit protein eL14

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Macromolecule #14: Large ribosomal subunit protein uL15

MacromoleculeName: Large ribosomal subunit protein uL15 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 17.52543 KDa
SequenceString:
MVRRFKRATK YRRGSRTHGW GRVGQHRKSG GSGGKGMVGF HKHKWSLVMK YGESGTGWPF YGKHGFKQPE TISVEWRPIN VGRLAELVK ELRERGEVRE EEGRLVVDLL KLGYNKLLGG GHMDVPLVVY TPVASKAAVE KIAKAGGEVR IVSLVHR

UniProtKB: Large ribosomal subunit protein uL15

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Macromolecule #15: 50S ribosomal protein L15e

MacromoleculeName: 50S ribosomal protein L15e / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 22.623768 KDa
SequenceString:
MPSAYQYMAM WYRKVGREVH ERLMRSVLIK WRKEPAIVRV ERPFRLERAR KLGYKPKQGV VVARVRLIRG PFNRRRPDSG RRPKRMGVY GITAWKSWRQ VAEERAARKF PGLEVLNSYW VADDGIYRYF EVILIDCNQP TIQRDPLYSG ICGREVPRRR L ARRLRERQ RKLIEHLKKT LLPKLKGTST A

UniProtKB: 50S ribosomal protein L15e

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Macromolecule #16: Large ribosomal subunit protein uL16

MacromoleculeName: Large ribosomal subunit protein uL16 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 19.89323 KDa
SequenceString:
MPARPARCYR RIKGPPYTRE EYIHGAPMIQ IPKFDMGTTS AAARAAFTMV AKLVAEERGQ IRMQALEAAR QISSKYLTKY VGDANYYLR LNVVPHHVLR ENRMLAMAGA DRLQEGMRLA FGSPAGRAAR VEPGQVIFYV EFKPEHLAHV KEALRRAASK L PIPTRIVV EPKGDGKTAS

UniProtKB: Large ribosomal subunit protein uL16

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Macromolecule #17: Large ribosomal subunit protein uL18

MacromoleculeName: Large ribosomal subunit protein uL18 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 23.424332 KDa
SequenceString: MARGARYKVP FRRRREGVTN YRKRRKLLLS RKPRLVVRKT NKHLIAQIVI ARPHGDETVV GLDTRVLSKF GWKGDENNTS AAYLLGLIV GYKARAKGIK EAILDIGLHR PTPGARVFAV MKGVIDAGVE VPHGEEVVPS EERIRGEHVA EYAKRLKEEA P EAYKARFS ...String:
MARGARYKVP FRRRREGVTN YRKRRKLLLS RKPRLVVRKT NKHLIAQIVI ARPHGDETVV GLDTRVLSKF GWKGDENNTS AAYLLGLIV GYKARAKGIK EAILDIGLHR PTPGARVFAV MKGVIDAGVE VPHGEEVVPS EERIRGEHVA EYAKRLKEEA P EAYKARFS RYLQRGLPPE ELPSHFEEVK KKIVEYYEQK LAKAVAR

UniProtKB: Large ribosomal subunit protein uL18

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Macromolecule #18: Large ribosomal subunit protein eL18

MacromoleculeName: Large ribosomal subunit protein eL18 / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 13.224723 KDa
SequenceString:
MPPNPTGPTN RQLRMLIRFL RKAATANSAN IWRAIAELVE RPRRSRVVVN VGKLNRVAND GDVVVIPGKL LGGGELKKRV VVAAVSVTP KAWKKVVEAG GEVLTIPELV RRNPKGSGVK IVI

UniProtKB: Large ribosomal subunit protein eL18

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Macromolecule #19: Large ribosomal subunit protein eL19

MacromoleculeName: Large ribosomal subunit protein eL19 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 17.414342 KDa
SequenceString:
MVDVKRLAAE ILGVGVSRVK ISPEAVGRLE EVVTKDDVRA LIDEGLIWAE PEKGNSRGRW RELHEKKKKG RRRGQGSRKG RRLDEEEAW VNKMRVMRRF LNTLKRQGKL DPATWRQLYR MVKGNYFRDL RHLKTYINEH KLTKEPVK

UniProtKB: Large ribosomal subunit protein eL19

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Macromolecule #20: Large ribosomal subunit protein eL20

MacromoleculeName: Large ribosomal subunit protein eL20 / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 8.929547 KDa
SequenceString:
MPKIYRVVGD TSTGMKFVVE VVGERPYDAL EKVYSVLGSR HKLKRTQIRI REVSVVEPSS AKSNEAKMLM VLEKVVRY

UniProtKB: Large ribosomal subunit protein eL20

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Macromolecule #21: Large ribosomal subunit protein eL21

MacromoleculeName: Large ribosomal subunit protein eL21 / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 11.319301 KDa
SequenceString:
MVKRTHGYRY KSRKLLSKAP RERGMSGLSR LLYEYKPGDK VVIDIDPTFI STAPHRRYQG KVGVVIGTRG RAYVIETYIG DKKKIIITT PEHLRPHLGG

UniProtKB: Large ribosomal subunit protein eL21

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Macromolecule #22: Large ribosomal subunit protein uL22

MacromoleculeName: Large ribosomal subunit protein uL22 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 21.309219 KDa
SequenceString:
MPHFHYSLTD EQAAELVFKK YGVRITPEQI AKAYAPEQRM SWKKSVEVAR FIKGMTLKQA KAWLEDVVKL KRPIPIKTFK KKQAHHATP WEGWPVAKWP VKVAKRYLQL LENLENNAKF KGLDVERLVI IHAAAHKGIK IPNIMPRAFG RATPFNEETV N VEIVAAEL PKEVVPKRYK LNLVKR

UniProtKB: Large ribosomal subunit protein uL22

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Macromolecule #23: Large ribosomal subunit protein uL23

MacromoleculeName: Large ribosomal subunit protein uL23 / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 9.307085 KDa
SequenceString:
MIKRFVITEK ALRLAERENK ITIIVERTAT KKQIADEVQR LYNVKVEKVN TLITPRGEKK AYVKLAEGYS AMDLLTKLGV L

UniProtKB: Large ribosomal subunit protein uL23

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Macromolecule #24: Large ribosomal subunit protein uL24

MacromoleculeName: Large ribosomal subunit protein uL24 / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 14.588312 KDa
SequenceString:
MPFTASAQPR KQRLSLYAAP LHLRRKLLNA KLSPELQKKL GVKRLPVRRG DTVLIMRGDF KGVTGKVVKV DLKRVRIFVE GATRTNSRG QTVYYPIHPS KVMIVDVDLS DKARQKLIER RKRGQHGSS

UniProtKB: Large ribosomal subunit protein uL24

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Macromolecule #25: Large ribosomal subunit protein eL24

MacromoleculeName: Large ribosomal subunit protein eL24 / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 7.10254 KDa
SequenceString:
MKIHKCSFCG ADIPPGYGIM YVRSDGTVQR FCSRKCFVSA VKYGRNPRKL AWVRKKKAKT SK

UniProtKB: Large ribosomal subunit protein eL24

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Macromolecule #26: Large ribosomal subunit protein uL29

MacromoleculeName: Large ribosomal subunit protein uL29 / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 9.15887 KDa
SequenceString:
MSERKLKPKA LREMSPEERR ELLNQLRAEL VKLQTQRSRG FVEKPGRIRQ VRRMIARILT IERELAKAGA RAEKGGAKA

UniProtKB: Large ribosomal subunit protein uL29

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Macromolecule #27: Large ribosomal subunit protein uL30

MacromoleculeName: Large ribosomal subunit protein uL30 / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 20.287805 KDa
SequenceString:
MMAATEQKTV YPRYAVIRLR GIPTTPGDIA ATLDLLRLRR KFTMVVVVGS PSVMGMIERV NDWVTWGEID ADTLAEVLRK RGRIVGDKP LTLEYLQKWG WNSFEEVALA YISGEIETLA CKKDFKAREG QRPPCIPYLK PFFRLHPPRG GLNSVKLHFS V GGDLGYRG PLINDLIKRM L

UniProtKB: Large ribosomal subunit protein uL30

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Macromolecule #28: Large ribosomal subunit protein eL30

MacromoleculeName: Large ribosomal subunit protein eL30 / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 10.886839 KDa
SequenceString:
MIDIGRELQV AINTGKVIIG LRETKKSLLT GAPKLVIIAA NAPRWAREDI EYYAKLAGVP IFTFPGSSIE LGAAAKRPHK IMALAVVDP GQSEILKLVE HA

UniProtKB: Large ribosomal subunit protein eL30

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Macromolecule #29: Large ribosomal subunit protein eL31

MacromoleculeName: Large ribosomal subunit protein eL31 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 10.668632 KDa
SequenceString:
MSEEKKVVLT REYVINLRRT REVSRTKRAK YAVGLIRRFV ARHLKVEPKA VKLGQALNEA LWARSIEKPP RRVHVVVEKL DDGTVRVEL KQ

UniProtKB: Large ribosomal subunit protein eL31

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Macromolecule #30: Large ribosomal subunit protein eL32

MacromoleculeName: Large ribosomal subunit protein eL32 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 18.172572 KDa
SequenceString:
MVVVPRRELP QPLKRLLRLR LQMKRRKPEF VRIDQWRYKR IEDSGWRNQR TLDNKIRRKW KGWPKPVEVG YRKPAAVRGL HPSGFVEVL VHRPEDLAGL DPKVHAVRIG RTVGLRKRLE IVKKARELGF YVLNPGKEVV ELLKKELNTA QPQQ

UniProtKB: Large ribosomal subunit protein eL32

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Macromolecule #31: Large ribosomal subunit protein eL34

MacromoleculeName: Large ribosomal subunit protein eL34 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 9.373127 KDa
SequenceString:
MPRPAYRSRS LRRVKVKTPG GRTVVHYEKR AKGVPKCAVT GQPLGGMNSK VYRFGISTRA PSRPYGGVVS HKVLARAIRY AVRR

UniProtKB: Large ribosomal subunit protein eL34

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Macromolecule #32: Large ribosomal subunit protein eL37

MacromoleculeName: Large ribosomal subunit protein eL37 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 6.174278 KDa
SequenceString:
MKGTPSMGKH NKGKTHIRCP RCGRHSYNVT KKYCASCGWG RSKRWRRYNW AK

UniProtKB: Large ribosomal subunit protein eL37

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Macromolecule #33: LSU ribosomal protein L38E

MacromoleculeName: LSU ribosomal protein L38E / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 7.954435 KDa
SequenceString:
MPKEIFLVEL WKKYGEKAQV VRVKRYEDFV KLKARLSGYL YTIRVPPDKA EQLISELKAK NVKVEEV

UniProtKB: LSU ribosomal protein L38E

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Macromolecule #34: Large ribosomal subunit protein eL39

MacromoleculeName: Large ribosomal subunit protein eL39 / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 6.030298 KDa
SequenceString:
MARNKPLGKK LRLAAALNSN RNPPLWVIAK TKRRVTRSPA RRHWRRQKLK A

UniProtKB: Large ribosomal subunit protein eL39

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Macromolecule #35: Large ribosomal subunit protein eL40

MacromoleculeName: Large ribosomal subunit protein eL40 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 6.356657 KDa
SequenceString:
MPITLDPEKL AIVLQHRFNY KICRNCGARN PPDAEKCRRC RSRNLRPKKF KKK

UniProtKB: Large ribosomal subunit protein eL40

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Macromolecule #36: eL42

MacromoleculeName: eL42 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 10.60361 KDa
SequenceString:
MKFPKSVNMY CPRCNTYTQH SVSNYHGGQR RSLAEGQRRY ERKLKGYGST PKPKQKRFAK VNKKVTLVFT CTKCGYKIVK SLGRMKKVE LV

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Macromolecule #37: Large ribosomal subunit protein eL43

MacromoleculeName: Large ribosomal subunit protein eL43 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 11.387464 KDa
SequenceString:
MPFSHTKIVG PAGRYGARYG MGIRRKVTTI EVKQRGKHRC PSCRSLVRLE RLAFGIWHCP KCGHTFAGGA YVPQTILGKT IAPEELKGV EAEKAKWKEA AKR

UniProtKB: Large ribosomal subunit protein eL43

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Macromolecule #38: DJ-1/PfpI domain-containing protein

MacromoleculeName: DJ-1/PfpI domain-containing protein / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 20.956449 KDa
SequenceString:
MPKALLYVID TAKRDEYPTL KNFLVKGGYE VDVAVGSRDV NVNYTVDLMT LPSDKLPTLF EEYDAFALAG GFKIYYHVLQ KKPPLKIWD LNIDKERLAQ LVVEFNRRRK LLIAPMAVPA YVAQLGLLSG RHATVYPVTE LIKILRDNKV NFVNKQVVRS E NIITVKDI TTTSEKEFLA ALREKG

UniProtKB: DJ-1/PfpI domain-containing protein

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Macromolecule #39: PaREP1 domain containing protein

MacromoleculeName: PaREP1 domain containing protein / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 10.938797 KDa
SequenceString:
MPLCSKWESL ITWAEKGGNS YKALEFREKL VECIVYTATE KVKKKKLDEA EELLKYGKEV AKKFNIEELN FHIALLEKEI SKIRQRRAQ AQTK

UniProtKB: PaREP1 domain containing protein

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Macromolecule #40: Small ribosomal subunit protein eS1

MacromoleculeName: Small ribosomal subunit protein eS1 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 24.74016 KDa
SequenceString: MAEKQKAVAA QEKVAISKRD PWALKKWFSV YAPPYLGGVF LAEVPAAEAQ KLVKRTLEVT LYDITKDISH LPIKLRFQIH RVDGLNAST RFKGLELTRD YLRSLIRRGT SKIMAITDVK TKDGWVMRVA VLGVTTHRVG TAQKSAIRKR FIEVVTKKAA E ADIGQFLK ...String:
MAEKQKAVAA QEKVAISKRD PWALKKWFSV YAPPYLGGVF LAEVPAAEAQ KLVKRTLEVT LYDITKDISH LPIKLRFQIH RVDGLNAST RFKGLELTRD YLRSLIRRGT SKIMAITDVK TKDGWVMRVA VLGVTTHRVG TAQKSAIRKR FIEVVTKKAA E ADIGQFLK EVLEGTLAAD LFIAGKKIAP MRKVEVAKIK VLRYPPEEER VAVKEVAAEA AASS

UniProtKB: Small ribosomal subunit protein eS1

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Macromolecule #41: Small ribosomal subunit protein uS2

MacromoleculeName: Small ribosomal subunit protein uS2 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 23.829814 KDa
SequenceString: MAEEAQYEYL VPLEKYLSAG VRLGTRLSNK YLEERGFIYA VRPDGLRIFD IKKIDERLRI AAKLIARYPP DRVLVHTTRP YGFKPVQMF CKFVGCKALT GRFIPGMLTN PNLSNYLEVD LLFVVDPRLD SQAVAEAAKM GIPVVALVDT DTPHQYIDFM I PCNNKGRK ...String:
MAEEAQYEYL VPLEKYLSAG VRLGTRLSNK YLEERGFIYA VRPDGLRIFD IKKIDERLRI AAKLIARYPP DRVLVHTTRP YGFKPVQMF CKFVGCKALT GRFIPGMLTN PNLSNYLEVD LLFVVDPRLD SQAVAEAAKM GIPVVALVDT DTPHQYIDFM I PCNNKGRK SLALIFWVLA RQVLRERGEL KPDQDLPVPP EEFETRLVQT

UniProtKB: Small ribosomal subunit protein uS2

+
Macromolecule #42: Small ribosomal subunit protein uS3

MacromoleculeName: Small ribosomal subunit protein uS3 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 24.688248 KDa
SequenceString: MSTAQRRLPV YKKILEENKK KWMIKEFLEY RLAKYGYIDS EILKTPLGTR IVIYAERPSR IIGRKGAIVK EVSSILANKL GVENPQIDV IDVSKIEAPE LFPKVVAYRI ANAMARGVRF RRVMFVAVRQ LMEAGAKGFE IVVSGKLSTE RAKFEKITYG K LYKIGYDA ...String:
MSTAQRRLPV YKKILEENKK KWMIKEFLEY RLAKYGYIDS EILKTPLGTR IVIYAERPSR IIGRKGAIVK EVSSILANKL GVENPQIDV IDVSKIEAPE LFPKVVAYRI ANAMARGVRF RRVMFVAVRQ LMEAGAKGFE IVVSGKLSTE RAKFEKITYG K LYKIGYDA KNRVRRAVVH VLLKPGIYGI EVRITPATLR YSDEYKIKPP TRPEAAAQ

UniProtKB: Small ribosomal subunit protein uS3

+
Macromolecule #43: Small ribosomal subunit protein uS4

MacromoleculeName: Small ribosomal subunit protein uS4 / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 18.516201 KDa
SequenceString:
MGGLKKPKKK YLAGKPKKIW NKQLLLEELQ LMGEYGLRNK KELWLARARL KWIVRRARAL LSMTAEERAP LEVPFKEKLY KMGFIEDPN VPLDRILSLD VRAILERRLQ TLVFRMGLAK SIHHARQLVV HGHVLVAGRR VTSPGFLVPR ELEDKITIEQ

UniProtKB: Small ribosomal subunit protein uS4

+
Macromolecule #44: Small ribosomal subunit protein eS4

MacromoleculeName: Small ribosomal subunit protein eS4 / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 26.774389 KDa
SequenceString: MVHLRKSLAP YWWPIPRKAG GVWAVRPSTG PHSLEYSLPL AVVVRDVLRY AKTLREARYI ISRGYIKVDG VVRKDYKFPI GLMDVVEIV PTGEIYRVVP DEAKYYDLKP IPSSEAALKP LRVEGKTAVS GGRIQLHFHD GRNLILPPDV GRQIKTFDTV V YDLENKAI ...String:
MVHLRKSLAP YWWPIPRKAG GVWAVRPSTG PHSLEYSLPL AVVVRDVLRY AKTLREARYI ISRGYIKVDG VVRKDYKFPI GLMDVVEIV PTGEIYRVVP DEAKYYDLKP IPSSEAALKP LRVEGKTAVS GGRIQLHFHD GRNLILPPDV GRQIKTFDTV V YDLENKAI KTHLPLRLGQ LAVVTHGGNI GFVGQFFEVV WTLKRRQSVV ALRKGEEVRR TILDYIMVIG TEAPVVKIS

UniProtKB: Small ribosomal subunit protein eS4

+
Macromolecule #45: Small ribosomal subunit protein uS5

MacromoleculeName: Small ribosomal subunit protein uS5 / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 22.153717 KDa
SequenceString: MSVVDLSLWE PKTALGRMVK EGKIRTIDEI FANNLLIKEP EIVDILLPGL KQELLNLNLV QRQTHAGERN QFQAVVAVGN EDGYVGVGI GKSRQVRQAI EKATREAKLN ITPVRRGCGS WKCSCDEPHS VPFVVSGKSG SVEVTLIPAP KGVGLVAGDV A KVVLRLAG ...String:
MSVVDLSLWE PKTALGRMVK EGKIRTIDEI FANNLLIKEP EIVDILLPGL KQELLNLNLV QRQTHAGERN QFQAVVAVGN EDGYVGVGI GKSRQVRQAI EKATREAKLN ITPVRRGCGS WKCSCDEPHS VPFVVSGKSG SVEVTLIPAP KGVGLVAGDV A KVVLRLAG IKDVWTKTRG DTRTTLNFAL AVFNALRNTY YFKL

UniProtKB: Small ribosomal subunit protein uS5

+
Macromolecule #46: Small ribosomal subunit protein eS6

MacromoleculeName: Small ribosomal subunit protein eS6 / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 16.248015 KDa
SequenceString:
MPTFKLVLSD PLSGKARQFE IKDPLAQRFV GLRIGEEIDG TVLKELIELP KGVKIRITGG SGVEGAPMHP GVPGPVKRYI LADGPPGYR PRKRGMRKKK LVRGDTITDS IVQINAVLVY PEGYSGPPAI PLGAKELEKL KGGKTEEAAA SQ

UniProtKB: Small ribosomal subunit protein eS6

+
Macromolecule #47: Small ribosomal subunit protein uS7

MacromoleculeName: Small ribosomal subunit protein uS7 / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 25.515701 KDa
SequenceString: MASIFGEQLP KTSRVEYIGD VPIIEECPRE LKTLDGNPIL LFGKWSFEDV VVRDPGLRRY ICLKPVVLPH TEGRYQKRRF GKAHIPIVE RLVNLLMRPG RNTGKKHKAY NIVKRAFEII YYKTGRNPIQ VFIDAIINTA PREEITRIIM GGIAYSVSVD V SPQRRLDL ...String:
MASIFGEQLP KTSRVEYIGD VPIIEECPRE LKTLDGNPIL LFGKWSFEDV VVRDPGLRRY ICLKPVVLPH TEGRYQKRRF GKAHIPIVE RLVNLLMRPG RNTGKKHKAY NIVKRAFEII YYKTGRNPIQ VFIDAIINTA PREEITRIIM GGIAYSVSVD V SPQRRLDL SLRWITEGAR QCSFNNPKPI EECLADEIMA AAANDPKSYA VRKREELERI AAASR

UniProtKB: Small ribosomal subunit protein uS7

+
Macromolecule #48: Small ribosomal subunit protein uS8

MacromoleculeName: Small ribosomal subunit protein uS8 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 14.836492 KDa
SequenceString:
MVMLDLLSNA LTAIKNAEAM GKRQVVIWPV NKLIYYTLRV LQRYGYVGEI EYIDDGRGGK YVVQLLGKIN DIGAIRPRFP VKYREIVEW EQKYLPARQI GILVISTSQG VMSHLEAKEK KIGGVLLAYV Y

UniProtKB: Small ribosomal subunit protein uS8

+
Macromolecule #49: Small ribosomal subunit protein eS8

MacromoleculeName: Small ribosomal subunit protein eS8 / type: protein_or_peptide / ID: 49 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 14.446925 KDa
SequenceString:
MKLGAFYKGG DLVKPSGGKK GRVRKTKKKA LGGGPPQIPK LGEEDIRYVE RVRGGNHKVR LRQARYANVY IPKERRHVKA KILSIVSSP SNPDYARRNY IVKGAIIQTE VGKAVVTSRP GQDGVINAVL IE

UniProtKB: Small ribosomal subunit protein eS8

+
Macromolecule #50: Small ribosomal subunit protein uS9

MacromoleculeName: Small ribosomal subunit protein uS9 / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 16.146151 KDa
SequenceString:
MPWVSILQEN PRVIISVGKK KTAVARAIIK PGMGRVRING YPLELWPIEM ARVKMQEPLI LAGDLAKKVD IEVNVRGGGY MGQAIATRI AIARGLVAYF QSEELKKLYE EYDPYMLKGD PRRTEPKKPG IKHARSKRQK AYR

UniProtKB: Small ribosomal subunit protein uS9

+
Macromolecule #51: Small ribosomal subunit protein uS10

MacromoleculeName: Small ribosomal subunit protein uS10 / type: protein_or_peptide / ID: 51 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 12.221515 KDa
SequenceString:
MSLASRRKVR IRLYGTNPAD LDQVAREIVD LAKKMGVAVR GPIPLPTKRL MVTVRRAPSG QGYHTFDHWE LRISKRLIDI EASERVLRR LMTIRVPDTV KIELQLI

UniProtKB: Small ribosomal subunit protein uS10

+
Macromolecule #52: Small ribosomal subunit protein uS11

MacromoleculeName: Small ribosomal subunit protein uS11 / type: protein_or_peptide / ID: 52 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 14.984247 KDa
SequenceString:
MSTAETPQQP QQQQKLRWGI AWIYSSSNNT IITITDLTGA ETVARVSGGM VVRADKDKPS PWAAMQAAYK AAQLALARGI NAVHIKVRG PGGYGMKVPG PGASAAIRAL ARSGLVIGRI EDVTPIPH(IAS)T IRPPSGRKGR RV

UniProtKB: Small ribosomal subunit protein uS11

+
Macromolecule #53: Small ribosomal subunit protein uS12

MacromoleculeName: Small ribosomal subunit protein uS12 / type: protein_or_peptide / ID: 53 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 16.477486 KDa
SequenceString:
MPGKKSPYGL FAGGKLKKKR QKFRWNDVTY KRRMLGLAEK YDPLEGAPMA RGIVLEKVGV EARKPNAAVR KCVRVQLVKN GKVVTAFVP YDGGLNYINE HDEVIIERIG GPEGKSLGDI PGVRFKVVKV NGVSLWAIWR GKKQKPTR

UniProtKB: Small ribosomal subunit protein uS12

+
Macromolecule #54: Small ribosomal subunit protein uS13

MacromoleculeName: Small ribosomal subunit protein uS13 / type: protein_or_peptide / ID: 54 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 16.758621 KDa
SequenceString:
MAQEIRAIVR IGDTDLDGNK TVAYALAKIR GIGIATAYAI CRKLGIDPHA TLGLLPEDQI NKLDWAVRNL HELAPAWFLN RRKDPETGR DLHLIGSELV LAAKRDVDLM KKLKSWKGIR HSLGLKVRGQ RTVTTGRFGA TAGVTKKKAA PGGK

UniProtKB: Small ribosomal subunit protein uS13

+
Macromolecule #55: Small ribosomal subunit protein uS14

MacromoleculeName: Small ribosomal subunit protein uS14 / type: protein_or_peptide / ID: 55 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 6.429787 KDa
SequenceString:
MPSTKPPKER PYGKSKIRCL RCGTREAVIR KYGLYLCRRC FREVAPVLGF KKYY

UniProtKB: Small ribosomal subunit protein uS14

+
Macromolecule #56: Small ribosomal subunit protein uS15

MacromoleculeName: Small ribosomal subunit protein uS15 / type: protein_or_peptide / ID: 56 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 17.587598 KDa
SequenceString:
MPHRSRHKKG RSSSVRPPHP TVPTWIQYTP EEVEQLAVEL ARRGFPPSQI GIILRDQYGI PLVKPITGKK LTKILEEHGI KQELPEDLL NLIRRALRIR KHLEEHPKDM ASRRGLQLVE SKIHRLIKYY KRVGKIPQDF VYNPEALSHL AT

UniProtKB: Small ribosomal subunit protein uS15

+
Macromolecule #57: Small ribosomal subunit protein uS17

MacromoleculeName: Small ribosomal subunit protein uS17 / type: protein_or_peptide / ID: 57 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 16.986256 KDa
SequenceString:
MTVVKLQSRP KVGDVVTLPD GKKVEVKNIG VPYVLPPAAV CDDPLCPWHG HLKIRLKLLE VTVEKVRMHK AAVVTHEWVH YLPKYNRYE RRRRRMRVRV PECIEVKPGD KVIIAETRPL SKTIAWVVIG KKEDVVEWKA KHETLPSV

UniProtKB: Small ribosomal subunit protein uS17

+
Macromolecule #58: Small ribosomal subunit protein eS17

MacromoleculeName: Small ribosomal subunit protein eS17 / type: protein_or_peptide / ID: 58 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 8.082505 KDa
SequenceString:
MGRVKPKFIK SLAEKLLEAY PDRFTESFKE NKKAVAELAD IPSKTVRNKV AGYITRLVKR QKAKEKAEQA A

UniProtKB: Small ribosomal subunit protein eS17

+
Macromolecule #59: Small ribosomal subunit protein uS19

MacromoleculeName: Small ribosomal subunit protein uS19 / type: protein_or_peptide / ID: 59 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 18.182557 KDa
SequenceString:
MSSKEAEAQK GKQGWITPTV IPPEEWGSFR YRGKTLEELL NMPMDEFIKL LPARQRRSLK RGLKPEHRKL LEKIRKAKRL MAQGKKVTI KTHCRDMIIL PEMVGLTIHV YNGITYIPVF ISPWHIGHYL GEFALTTRIV QHGEPGLKAT RSSLHIAAK

UniProtKB: Small ribosomal subunit protein uS19

+
Macromolecule #60: Small ribosomal subunit protein eS19

MacromoleculeName: Small ribosomal subunit protein eS19 / type: protein_or_peptide / ID: 60 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 17.770932 KDa
SequenceString:
MTSVKDVPAD LLIAELAKYI KDNVPQVKPP VWAPFVKTGA NKERPPMSED WWYIRAASIM RKLYIYGPVG VGSLRTAYGY RAKIGDKTR PERTRKAGGA IIRKILQQLE HAGFVTKTKR GRVLTPEGKS LVDRVAARIA KELVKQRPEL AKYVAPPKE

UniProtKB: Small ribosomal subunit protein eS19

+
Macromolecule #61: Small ribosomal subunit protein eS24

MacromoleculeName: Small ribosomal subunit protein eS24 / type: protein_or_peptide / ID: 61 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 14.855409 KDa
SequenceString:
MSPVSEAQFN ILSLRENKLL GRKEVLVEIL HRKSSTPTRQ SVREWLAKQL GVEVDKIFVR KIKTEYGIGK SKAEVHVYTD GALARVIEP LYILARNLGE EGKKLLEEAR KRRNERREKR RRKKKGGGK

UniProtKB: Small ribosomal subunit protein eS24

+
Macromolecule #62: SSU ribosomal protein S25E

MacromoleculeName: SSU ribosomal protein S25E / type: protein_or_peptide / ID: 62 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 12.477728 KDa
SequenceString:
MGGKKRPTLS QLAKKAEKEK AQPQQQKSKK EVKKEEAPAK RTIQTLDEKV FQTIAKEVQS LKAVTPYEIA TKYGIKMSLA FKVLRALRD RGDLVLVAKG HRTEVYVPKR S

UniProtKB: SSU ribosomal protein S25E

+
Macromolecule #63: SSU ribosomal protein S26E

MacromoleculeName: SSU ribosomal protein S26E / type: protein_or_peptide / ID: 63 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 11.571864 KDa
SequenceString:
MAMPKKRKNR GRKKGDKGRE PYVYCDNCGK VVPRSKAIRL TVPYSPVPPD LARELEKQGA IISRYLVTKT YCINCAVFFG IIKVRPREE RKKRVPLQQV I

UniProtKB: SSU ribosomal protein S26E

+
Macromolecule #64: Small ribosomal subunit protein eS27

MacromoleculeName: Small ribosomal subunit protein eS27 / type: protein_or_peptide / ID: 64 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 7.446884 KDa
SequenceString:
MPQRFSRVLI PQPRSRFVRL RCPDCGNEQV TFSHAAMVVR CLVCGRVLAQ PTGGKAIFAG HVVKVLE

UniProtKB: Small ribosomal subunit protein eS27

+
Macromolecule #65: eS28

MacromoleculeName: eS28 / type: protein_or_peptide / ID: 65 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 8.575992 KDa
SequenceString:
MAEEVKFSPY EDAVAGLVVQ ILGRTGVAGE VTQVKIRVLE GRDKGRVLTR NVKGPVRLGD IVMLRETERE ARRITAR

+
Macromolecule #66: SSU ribosomal protein S30E

MacromoleculeName: SSU ribosomal protein S30E / type: protein_or_peptide / ID: 66 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 6.113139 KDa
SequenceString:
MPSHGSLTKA GKVRNQTPKI PAKPRKNLTP RRRNIRNYKR RVLYASQQAA AAEA

UniProtKB: SSU ribosomal protein S30E

+
Macromolecule #67: aS35

MacromoleculeName: aS35 / type: protein_or_peptide / ID: 67 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 7.856398 KDa
SequenceString:
MAEELEAVAA KLITRLREAE RLALEGKTSE AKAILKEVLK EARERGLEKS LRNLLLRVKA LLRRKTRR

+
Macromolecule #68: Small zinc finger protein HVO-2753-like zinc-binding pocket domai...

MacromoleculeName: Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein
type: protein_or_peptide / ID: 68 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Pyrobaculum calidifontis JCM 11548 (archaea)
Molecular weightTheoretical: 6.956113 KDa
SequenceString:
MSIRGARIYG PSPPADSTTN WPLAPLERGV VFACPNCGKT TIVRSARARK LGVPYRCPEC GFVGP

UniProtKB: Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein

+
Macromolecule #69: SPERMINE

MacromoleculeName: SPERMINE / type: ligand / ID: 69 / Number of copies: 64 / Formula: SPM
Molecular weightTheoretical: 202.34 Da
Chemical component information

ChemComp-SPM:
SPERMINE

+
Macromolecule #70: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 70 / Number of copies: 252 / Formula: MG
Molecular weightTheoretical: 24.305 Da

+
Macromolecule #71: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 71 / Number of copies: 11 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

+
Macromolecule #72: water

MacromoleculeName: water / type: ligand / ID: 72 / Number of copies: 7812 / Formula: HOH
Molecular weightTheoretical: 18.015 Da
Chemical component information

ChemComp-HOH:
WATER

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Experimental details

-
Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

-
Sample preparation

Concentration0.12 mg/mL
BufferpH: 7
Component:
ConcentrationFormulaName
20.0 mMC8H18N2O4SHEPES
10.0 mMKClPotassium Chloride
20.0 mMMg(CH3COO)2Magnesium Acetate
3.0 mMC10H26N4Spermine
2.0 mMC4H10O2S2DTT
GridModel: UltrAuFoil R1.2/1.3 / Material: GOLD / Support film - Material: CARBON / Support film - topology: CONTINUOUS / Pretreatment - Type: GLOW DISCHARGE
VitrificationCryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277.15 K / Instrument: FEI VITROBOT MARK IV

-
Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: GATAN K3 (6k x 4k) / Number grids imaged: 1 / Number real images: 7318 / Average electron dose: 40.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: OTHER / Imaging mode: BRIGHT FIELD / Nominal defocus max: 1.5 µm / Nominal defocus min: 0.5 µm / Nominal magnification: 105000
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

+
Image processing

Particle selectionNumber selected: 2360632
CTF correctionSoftware - Name: cryoSPARC (ver. 4.4) / Type: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: OTHER
Final reconstructionResolution.type: BY AUTHOR / Resolution: 2.36 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC (ver. 4.4) / Details: Global resolution / Number images used: 129829
Initial angle assignmentType: MAXIMUM LIKELIHOOD / Software - Name: cryoSPARC (ver. 4.4)
Final angle assignmentType: MAXIMUM LIKELIHOOD / Software - Name: cryoSPARC (ver. 4.4)

-
Atomic model buiding 1

RefinementProtocol: AB INITIO MODEL
Output model

PDB-9e71:
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome

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