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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Overall map of PSII-CAC | |||||||||
![]() | Overall map of PSII-CAC from Rhodomonas salina | |||||||||
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![]() | Photosystem II associated with CAC antenna from Rhodomonas Salina / PHOTOSYNTHESIS | |||||||||
Biological species | ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 2.57 Å | |||||||||
![]() | Si L / Li M | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of inactive Photosystem II associated with CAC antenna from Rhodomonas Salina Authors: Si L / Li M | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 257.5 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 14 KB 14 KB | Display Display | ![]() |
Images | ![]() | 129.8 KB | ||
Filedesc metadata | ![]() | 3.7 KB | ||
Others | ![]() ![]() | 217.1 MB 216.8 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1014.4 KB | Display | ![]() |
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Full document | ![]() | 1014 KB | Display | |
Data in XML | ![]() | 16.1 KB | Display | |
Data in CIF | ![]() | 19.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | Overall map of PSII-CAC from Rhodomonas salina | ||||||||||||||||||||
Voxel size | X=Y=Z: 1.04003 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #1
File | emd_38912_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_38912_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Inactive Photosystem II associated with chlorophyll a/c binding p...
Entire | Name: Inactive Photosystem II associated with chlorophyll a/c binding protein |
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Components |
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-Supramolecule #1: Inactive Photosystem II associated with chlorophyll a/c binding p...
Supramolecule | Name: Inactive Photosystem II associated with chlorophyll a/c binding protein type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#17, #19-#24 |
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Source (natural) | Organism: ![]() |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | 3D array |
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Sample preparation
Buffer | pH: 7.5 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN |
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Image recording | Film or detector model: DIRECT ELECTRON DE-16 (4k x 4k) / Average electron dose: 60.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.2 µm / Nominal defocus min: 1.2 µm |
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Image processing
Startup model | Type of model: PDB ENTRY PDB model - PDB ID: |
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Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 2.57 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 112613 |
Initial angle assignment | Type: ANGULAR RECONSTITUTION |
Final angle assignment | Type: ANGULAR RECONSTITUTION |