+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-35505 | |||||||||
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Title | Cryo-EM structure of hnRAC1 fibril. | |||||||||
Map data | ||||||||||
Sample |
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Keywords | reversible fibril / RNA BINDING PROTEIN | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | helical reconstruction / cryo EM / Resolution: 3.69 Å | |||||||||
Authors | Li DN / Ma YY / Li D / Dai B / Liu C | |||||||||
Funding support | 1 items
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Citation | Journal: To Be Published Title: Formed fibrils of hnRNP A1 reversible amyloid core GFGGNDNFG (residues 209-217) Authors: Li DN / Ma YY / Li D / Dai B / Liu C | |||||||||
History |
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-Structure visualization
Supplemental images |
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-Downloads & links
-EMDB archive
Map data | emd_35505.map.gz | 31.5 MB | EMDB map data format | |
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Header (meta data) | emd-35505-v30.xml emd-35505.xml | 12.1 KB 12.1 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_35505_fsc.xml | 14.2 KB | Display | FSC data file |
Images | emd_35505.png | 44.7 KB | ||
Filedesc metadata | emd-35505.cif.gz | 4.1 KB | ||
Others | emd_35505_half_map_1.map.gz emd_35505_half_map_2.map.gz | 194.3 MB 194.1 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-35505 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-35505 | HTTPS FTP |
-Validation report
Summary document | emd_35505_validation.pdf.gz | 938.2 KB | Display | EMDB validaton report |
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Full document | emd_35505_full_validation.pdf.gz | 937.8 KB | Display | |
Data in XML | emd_35505_validation.xml.gz | 21.5 KB | Display | |
Data in CIF | emd_35505_validation.cif.gz | 27.9 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-35505 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-35505 | HTTPS FTP |
-Related structure data
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_35505.map.gz / Format: CCP4 / Size: 244.1 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
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Voxel size | X=Y=Z: 0.83 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #1
File | emd_35505_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_35505_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Sample components
-Entire : Formed fibrils of hnRNP A1 reversible amyloid core GFGGNDNFG (res...
Entire | Name: Formed fibrils of hnRNP A1 reversible amyloid core GFGGNDNFG (residues 209-217) |
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Components |
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-Supramolecule #1: Formed fibrils of hnRNP A1 reversible amyloid core GFGGNDNFG (res...
Supramolecule | Name: Formed fibrils of hnRNP A1 reversible amyloid core GFGGNDNFG (residues 209-217) type: organelle_or_cellular_component / ID: 1 / Parent: 0 / Macromolecule list: all |
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Source (natural) | Organism: Homo sapiens (human) |
-Macromolecule #1: GLY-PHE-GLY-GLY-ASN-ASP-ASN-PHE-GLY
Macromolecule | Name: GLY-PHE-GLY-GLY-ASN-ASP-ASN-PHE-GLY / type: protein_or_peptide / ID: 1 / Number of copies: 24 / Enantiomer: LEVO |
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Source (natural) | Organism: Homo sapiens (human) |
Molecular weight | Theoretical: 883.863 Da |
Sequence | String: GFGGNDNFG |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | helical reconstruction |
Aggregation state | filament |
-Sample preparation
Buffer | pH: 7 |
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Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 55.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.0 µm / Nominal defocus min: 1.0 µm |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |