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Open data
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Basic information
Entry | ![]() | |||||||||||||||
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Title | Spike 2-up RBD with THSC20.HVTR26 (Fab26): State - I | |||||||||||||||
![]() | State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) | |||||||||||||||
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![]() | Monoclonal antibodies / SARS-CoV-2 / Cryo-EM / IMMUNE SYSTEM | |||||||||||||||
Biological species | ![]() ![]() ![]() | |||||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 4.4 Å | |||||||||||||||
![]() | Rencilin CF / Ansari MY / Chatterjee A / Deshpande S / Mukherjee S / Singh R / Jayatheertha S / Reddy PM / Das P / Hingankar N ...Rencilin CF / Ansari MY / Chatterjee A / Deshpande S / Mukherjee S / Singh R / Jayatheertha S / Reddy PM / Das P / Hingankar N / Rathore D / Varadarajan R / Bhattacharya J / Dutta S | |||||||||||||||
Funding support | ![]() ![]()
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![]() | ![]() Title: State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) Authors: Rencilin CF / Ansari MY / Chatterjee A / Deshpande S / Mukherjee S / Singh R / Jayatheertha S / Reddy PM / Das P / Hingankar N / Rathore D / Varadarajan R / Bhattacharya J / Dutta S | |||||||||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 164.5 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 14 KB 14 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 12.9 KB | Display | ![]() |
Images | ![]() | 47.9 KB | ||
Filedesc metadata | ![]() | 4.1 KB | ||
Others | ![]() ![]() | 141 MB 140.9 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 904.3 KB | Display | ![]() |
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Full document | ![]() | 903.8 KB | Display | |
Data in XML | ![]() | 20.4 KB | Display | |
Data in CIF | ![]() | 26.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.92 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) - Half map 1
File | emd_34563_half_map_1.map | ||||||||||||
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Annotation | State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) - Half map 1 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) - Half map 2
File | emd_34563_half_map_2.map | ||||||||||||
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Annotation | State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) - Half map 2 | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Wuhan SARS-CoV-2 Spike trimer complex with THSC20.HVTR26 (Fab26) ...
Entire | Name: Wuhan SARS-CoV-2 Spike trimer complex with THSC20.HVTR26 (Fab26) [State I - 2-up RBD] |
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Components |
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-Supramolecule #1: Wuhan SARS-CoV-2 Spike trimer complex with THSC20.HVTR26 (Fab26) ...
Supramolecule | Name: Wuhan SARS-CoV-2 Spike trimer complex with THSC20.HVTR26 (Fab26) [State I - 2-up RBD] type: complex / ID: 1 / Parent: 0 |
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Source (natural) | Organism: ![]() ![]() |
-Supramolecule #2: THSC20.HVTR26 (Fab26)
Supramolecule | Name: THSC20.HVTR26 (Fab26) / type: complex / ID: 2 / Parent: 1 |
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Source (natural) | Organism: ![]() |
-Supramolecule #3: Wuhan SARS-CoV-2 Spike Protein
Supramolecule | Name: Wuhan SARS-CoV-2 Spike Protein / type: complex / ID: 3 / Parent: 1 |
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Source (natural) | Organism: ![]() ![]() |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.4 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TALOS ARCTICA |
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Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: COUNTING / Average electron dose: 45.0 e/Å2 |
Electron beam | Acceleration voltage: 200 kV / Electron source: ![]() |
Electron optics | Illumination mode: OTHER / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.75 µm / Nominal defocus min: 1.25 µm |
Experimental equipment | ![]() Model: Talos Arctica / Image courtesy: FEI Company |