+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-34547 | |||||||||||||||
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Title | Spike 3-up RBD with THSC20.HVTR04 (Fab4): State - II | |||||||||||||||
Map data | State - II: Spike 3-up RBD with THSC20.HVTR04 (Fab4) | |||||||||||||||
Sample |
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Keywords | Monoclonal antibodies / SARS-CoV-2 / Cryo-EM / IMMUNE SYSTEM | |||||||||||||||
Biological species | Severe acute respiratory syndrome coronavirus 2 / Homo sapiens (human) | |||||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 5.152 Å | |||||||||||||||
Authors | Rencilin CF / Ansari MY / Chatterjee A / Deshpande S / Mukherjee S / Singh R / Jayatheertha S / Reddy PM / Das P / Hingankar N ...Rencilin CF / Ansari MY / Chatterjee A / Deshpande S / Mukherjee S / Singh R / Jayatheertha S / Reddy PM / Das P / Hingankar N / Rathore D / Varadarajan R / Bhattacharya J / Dutta S | |||||||||||||||
Funding support | India, United States, 4 items
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Citation | Journal: To Be Published Title: Spike 2-up RBD with THSC20.HVTR04 (Fab4): State - I Authors: Rencilin CF / Ansari MY / Chatterjee A / Deshpande S / Mukherjee S / Singh R / Jayatheertha S / Reddy PM / Das P / Hingankar N / Rathore D / Varadarajan R / Bhattacharya J / Dutta S | |||||||||||||||
History |
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-Structure visualization
Supplemental images |
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-Downloads & links
-EMDB archive
Map data | emd_34547.map.gz | 132.7 MB | EMDB map data format | |
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Header (meta data) | emd-34547-v30.xml emd-34547.xml | 14 KB 14 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_34547_fsc.xml | 12.1 KB | Display | FSC data file |
Images | emd_34547.png | 54.1 KB | ||
Filedesc metadata | emd-34547.cif.gz | 4.2 KB | ||
Others | emd_34547_half_map_1.map.gz emd_34547_half_map_2.map.gz | 114.1 MB 114 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-34547 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-34547 | HTTPS FTP |
-Related structure data
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_34547.map.gz / Format: CCP4 / Size: 144.7 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||
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Annotation | State - II: Spike 3-up RBD with THSC20.HVTR04 (Fab4) | ||||||||||||||||||||||||||||||||||||
Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 0.92 Å | ||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: State - II: Spike 3-up RBD with THSC20.HVTR04 (Fab4)-half map 1
File | emd_34547_half_map_1.map | ||||||||||||
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Annotation | State - II: Spike 3-up RBD with THSC20.HVTR04 (Fab4)-half map 1 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: State - II: Spike 3-up RBD with THSC20.HVTR04 (Fab4)-half map 2
File | emd_34547_half_map_2.map | ||||||||||||
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Annotation | State - II: Spike 3-up RBD with THSC20.HVTR04 (Fab4)-half map 2 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Sample components
-Entire : Wuhan SARS-CoV-2 Spike trimer complex with THSC20.HVTR04 (Fab4) [...
Entire | Name: Wuhan SARS-CoV-2 Spike trimer complex with THSC20.HVTR04 (Fab4) [State II - 3-up RBD] |
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Components |
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-Supramolecule #1: Wuhan SARS-CoV-2 Spike trimer complex with THSC20.HVTR04 (Fab4) [...
Supramolecule | Name: Wuhan SARS-CoV-2 Spike trimer complex with THSC20.HVTR04 (Fab4) [State II - 3-up RBD] type: complex / ID: 1 / Parent: 0 |
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Source (natural) | Organism: Severe acute respiratory syndrome coronavirus 2 |
-Supramolecule #2: THSC20.HVTR04(Fab4)
Supramolecule | Name: THSC20.HVTR04(Fab4) / type: complex / ID: 2 / Parent: 1 |
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Source (natural) | Organism: Homo sapiens (human) |
-Supramolecule #3: Wuhan SARS-CoV-2 Spike protein
Supramolecule | Name: Wuhan SARS-CoV-2 Spike protein / type: complex / ID: 3 / Parent: 1 |
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Source (natural) | Organism: Severe acute respiratory syndrome coronavirus 2 / Strain: Wuhan |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.4 |
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Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TALOS ARCTICA |
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Electron beam | Acceleration voltage: 200 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: OTHER / Imaging mode: BRIGHT FIELDBright-field microscopy / Nominal defocus max: 2.75 µm / Nominal defocus min: 1.25 µm |
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: COUNTING / Average electron dose: 50.0 e/Å2 |
Experimental equipment | Model: Talos Arctica / Image courtesy: FEI Company |