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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Dimer structure of yeast THO complex | |||||||||
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Biological species | ![]() ![]() ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 4.2 Å | |||||||||
![]() | Chen C / Tan M / Wu Z / Wu J / Lei M | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structural and functional insights into R-loop prevention and mRNA export by budding yeast THO-Sub2 complex. Authors: Cong Chen / Ming Tan / Zhenfang Wu / Yuebin Zhang / Fanyang He / Yanjia Lu / Shaobai Li / Mi Cao / Guohui Li / Jian Wu / Hong Cheng / Ming Lei / ![]() | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 410.3 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 14.4 KB 14.4 KB | Display Display | ![]() |
Images | ![]() | 89.8 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 508.8 KB | Display | ![]() |
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Full document | ![]() | 508.3 KB | Display | |
Data in XML | ![]() | 7.5 KB | Display | |
Data in CIF | ![]() | 8.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Voxel size | X=Y=Z: 1.1 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
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Sample components
-Entire : THO Complex
Entire | Name: THO Complex |
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Components |
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-Supramolecule #1: THO Complex
Supramolecule | Name: THO Complex / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1 |
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Source (natural) | Organism: ![]() ![]() |
-Macromolecule #1: Hpr1p
Macromolecule | Name: Hpr1p / type: protein_or_peptide / ID: 1 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Recombinant expression | Organism: ![]() ![]() |
Sequence | String: MSNTEELIQN SIGFLQKTFK ALPVSFDSIR HEPLPSSMLH ASVLNFEWEP LEKNISAIHD RDSLIDIILK RFIIDSMTN AIEDEEENNL EKGLLNSCIG LDFVYNSRFN RSNPASWGNT FFELFSTIID LLNSPSTFLK F WPYAESRI EWFKMNTSVE PVSLGESNLI ...String: MSNTEELIQN SIGFLQKTFK ALPVSFDSIR HEPLPSSMLH ASVLNFEWEP LEKNISAIHD RDSLIDIILK RFIIDSMTN AIEDEEENNL EKGLLNSCIG LDFVYNSRFN RSNPASWGNT FFELFSTIID LLNSPSTFLK F WPYAESRI EWFKMNTSVE PVSLGESNLI SYKQPLYEKL RHWNDILAKL ENNDILNTVK HYNMKYKLEN FL SELLPIN EESNFNRSAS ISALQESDNE WNRSARERES NRSSDVIFAA DYNFVFYHLI ICPIEFAFSD LEY KNDVDR SLSPLLDAIL EIEENFYSKI KMNNRTRYSL EEALNTEYYA NYDVMTPKLP VYMKHSNAMK MDRN EFWAN LQNIKESDDY TLRPTIMDIS LSNTTCLYKQ LTQEDDDYYR KQFILQLCFT TNLIRNLISS DETRN FYKS CYLRENPLSD IDFENLDEVN KKRGLNLCSY ICDNRVLKFY KIKDPDFYRV IRKLMSSDEK FTTAKI DGF KEFQNFRISK EKIPPPAFDE TFKKFTFIKM GNKLINNVWK IPTGLDKIEQ EVKKPEGVYE AAQAKWE SK ISSETSGGEA KDEIIRQWQT LRFLRSRYLF DFDKVNEKTG VDGLFEEPRK VEALDDSFKE KLLYKINQ E HRKKLQDARE YKIGKERKKR ALEEEASFPE REQKIKSQRI NSASQTEGDE LKSEQTQPKG EISEENTKI KSSEVSSQDP DSGVAGEFAP QNTTAQLENP KTEDNNAATS NISNGSSTQD MK |
-Macromolecule #2: Tho2p
Macromolecule | Name: Tho2p / type: protein_or_peptide / ID: 2 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Recombinant expression | Organism: ![]() ![]() |
Sequence | String: MAEQTLLSKL NALSQKVIPP ASPSQASILT EEVIRNWPER SKTLCSDFTA LESNDEKEDW LRTLFIELFD FINKNDENS PLKLSDVASF TNELVNHERQ VSQASIVGKM FIAVSSTVPN INDLTTISLC KLIPSLHEEL F KFSWISSK LLNKEQTTLL RHLLKKSKYE ...String: MAEQTLLSKL NALSQKVIPP ASPSQASILT EEVIRNWPER SKTLCSDFTA LESNDEKEDW LRTLFIELFD FINKNDENS PLKLSDVASF TNELVNHERQ VSQASIVGKM FIAVSSTVPN INDLTTISLC KLIPSLHEEL F KFSWISSK LLNKEQTTLL RHLLKKSKYE LKKYNLLVEN SVGYGQLVAL LILAYYDPDN FSKVSAYLKE IY HIMGKYS LDSIRTLDVI LNVSSQFITE GYKFFIALLR KSDSWPSSHV ANNSNYSSLN EGGNMIAANI ISF NLSQYN EEVDKENYER YMDMCCILLK NGFVNFYSIW DNVKPEMEFL QEYIQNLETE LEEESTKGVE NPLA MAAAL STENETDEDN ALVVNDDVNM KDKISEETNA DIESKGKQKT QQDILLFGKI KLLERLLIHG CVIPV IHVL KQYPKVLYVS ESLSRYLGRV FEYLLNPLYT SMTSSGESKD MATALMITRI DNGILAHKPR LIHKYK THE PFESLELNSS YVFYYSEWNS NLTPFASVND LFENSHIYLS IIGPYLGRIP TLLSKISRIG VADIQKN HG SESLHVTIDK WIDYVRKFIF PATSLLQNNP IATSEVYELM KFFPFEKRYF IYNEMMTKLS QDILPLKV S FNKAEREAKS ILKALSIDTI AKESRRFAKL ISTNPLASLV PAVKQIENYD KVSELVVYTT KYFNDFAYD VLQFVLLLRL TYNRPAVQFD GVNQAMWVQR LSIFIAGLAK NCPNMDISNI ITYILKTLHN GNIIAVSILK ELIITVGGI RDLNEVNMKQ LLMLNSGSPL KQYARHLIYD FRDDNSVISS RLTSFFTDQS AISEIILLLY T LNLKANTQ NSHYKILSTR CDEMNTLLWS FIELIKHCLK GKAFEENVLP FVELNNRFHL STPWTFHIWR DY LDNQLNS NENFSIDELI EGAEFSDVDL TKISKDLFTT FWRLSLYDIH FDKSLYDERK NALSGENTGH MSN RKKHLI QNQIKDILVT GISHQRAFKK TSEFISEKSN VWNKDCGEDQ IKIFLQNCVV PRVLFSPSDA LFSS FFIFM AFRTENLMSI LNTCITSNIL KTLLFCCTSS EAGNLGLFFT DVLKKLEKMR LNGDFNDQAS RKLYE WHSV ITEQVIDLLS EKNYMSIRNG IEFMKHVTSV FPVVKAHIQL VYTTLEENLI NEEREDIKLP SSALIG HLK ARLKDALELD EFCTLTEEEA EQKRIREMEL EEIKNYETAC QNEQKQVALR KQLELNKSQR LQNDPPK SV ASGSAGLNSK DRYTYSRNEP VIPTKPSSSQ WSYSKVTRHV DDINHYLATN HLQKAISLVE NDDETRNL R KLSKQNMPIF DFRNSTLEIF ERYFRTLIQN PQNPDFAEKI DSLKRYIKNI SREPYPDTTS SYSEAAAPE YTKRSSRYSG NAGGKDGYGS SNYRGPSNDR SAPKNIKPIS SYAHKRSELP TRPSKSKTYN DRSRALRPTG PDRGDGFDQ RDNRLREEYK KNSSQRSQLR FPEKPFQEGK DSSKANPYQA SSYKRDSPSE NEEKPNKRFK K DETIRNKF QTQDYRNTRD SGAAHRANEN QRYNGNRKSN TQALPQGPKG GNYVSRYQR |
-Macromolecule #3: Tex1p
Macromolecule | Name: Tex1p / type: protein_or_peptide / ID: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Recombinant expression | Organism: ![]() ![]() |
Sequence | String: MSTIGAVDIL NQKTITSEVA ASVTSKYLQS TFSKGNTSHI EDKRFIHVSS RSHSRFTSTP ITPNEILSLK FHVSGSSMA YSRMDGSLTV WFIKDASFDK SVEVYIPDCC GSDKLATDLS WNPTSLNQIA VVSNSSEISL L LINEKSLT ASKLRTLSLG SKTKVNTCLY ...String: MSTIGAVDIL NQKTITSEVA ASVTSKYLQS TFSKGNTSHI EDKRFIHVSS RSHSRFTSTP ITPNEILSLK FHVSGSSMA YSRMDGSLTV WFIKDASFDK SVEVYIPDCC GSDKLATDLS WNPTSLNQIA VVSNSSEISL L LINEKSLT ASKLRTLSLG SKTKVNTCLY DPLGNWLLAA TKSEKIYLFD VKKDHSSVCS LNISDISQED ND VVYSLAW SNGGSHIFIG FKSGYLAILK AKHGILEVCT KIKAHTGPIT EIKMDPWGRN FITGSIDGNC YVW NMKSLC CELIINDLNS AVTTLDVCHL GKILGICTED EMVYFYDLNS GNLLHSKSLA NYKTDPVLKF YPDK SWYIM SGKNDTLSNH FVKNEKNLIT YWKDMFDNTM IEKRRKNNGG GNNHNKRTSK NTDRIGKDRP SRFNS KK |
-Macromolecule #4: Mft1p
Macromolecule | Name: Mft1p / type: protein_or_peptide / ID: 4 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Recombinant expression | Organism: ![]() ![]() |
Sequence | String: MPLSQKQIDQ VRTKVHYSEV DTPFNKYLDI LGKVTKLTGS IINGTLSNDD SKIEKLTEQN ISQLKESAHL RFLDLQSSI DTKKVADENW ETCQQETLAK LENLKDKLPD IKSIHSKLLL RIGKLQGLYD SVQVINREVE G LSEGRTSL VVTRAEWEKE LGTDLVKFLI ...String: MPLSQKQIDQ VRTKVHYSEV DTPFNKYLDI LGKVTKLTGS IINGTLSNDD SKIEKLTEQN ISQLKESAHL RFLDLQSSI DTKKVADENW ETCQQETLAK LENLKDKLPD IKSIHSKLLL RIGKLQGLYD SVQVINREVE G LSEGRTSL VVTRAEWEKE LGTDLVKFLI EKNYLKLVDP GLKKDSSEER YRIYDDFSKG PKELESINAS MK SDIENVR QEVSSYKEKW LRDAEIFGKI TSIFKEELLK RDGLLNEAEG DNIDEDYESD EDEERKERFK RQR SMVEVN TIENVDEKEE SDHEYDDQED EENEEEDDME VDVEDIKEDN EVDGESSQQE DNSRQGNNEE TDKE TGVIE EPDAVNDAEE ADSDHSSRKL GGTTSDFSAS SSVEEVK |
-Macromolecule #5: Thp2p
Macromolecule | Name: Thp2p / type: protein_or_peptide / ID: 5 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Recombinant expression | Organism: ![]() ![]() |
Sequence | String: MTKEEGRTYF ESLCEEEQSL QESQTHLLNI LDILSVLADP RSSDDLLTES LKKLPDLHRE LINSSIRLRY DKYQTREAQ LLEDTKTGRD VAAGVQNPKS ISEYYSTFEH LNRDTLRYIN LLKRLSVDLA KQVEVSDPSV T VYEMDKWV PSEKLQGILE QYCAPDTDIR ...String: MTKEEGRTYF ESLCEEEQSL QESQTHLLNI LDILSVLADP RSSDDLLTES LKKLPDLHRE LINSSIRLRY DKYQTREAQ LLEDTKTGRD VAAGVQNPKS ISEYYSTFEH LNRDTLRYIN LLKRLSVDLA KQVEVSDPSV T VYEMDKWV PSEKLQGILE QYCAPDTDIR GVDAQIKNYL DQIKMARAKF GLENKYSLKE RLSTLTKELN HW RKEWDDI EMLMFGDDAH SMKKMIQKID SLKSEINAPS ESYPVDKEGD IVLE |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.5 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K3 (6k x 4k) / Average electron dose: 50.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 4.2 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 115764 |
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Initial angle assignment | Type: COMMON LINE |
Final angle assignment | Type: MAXIMUM LIKELIHOOD |