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- EMDB-25591: Consensus map of 40S ribosome with head motion from wt IRES eIF5B... -
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Open data
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Basic information
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Title | Consensus map of 40S ribosome with head motion from wt IRES eIF5B-containing sample | |||||||||||||||
![]() | Post processed map | |||||||||||||||
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Biological species | ![]() ![]() ![]() | |||||||||||||||
Method | ![]() ![]() | |||||||||||||||
![]() | Brown ZP / Abaeva IS / De S / Hellen CUT / Pestova TV / Frank J | |||||||||||||||
Funding support | ![]()
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![]() | ![]() Title: Comprehensive structural overview of the HCV IRES-mediated translation initiation pathway Authors: Brown ZP / Abaeva IS / De S / Hellen CUT / Pestova TV / Frank J | |||||||||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 228.2 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 22.9 KB 22.9 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 14.3 KB | Display | ![]() |
Images | ![]() | 32.6 KB | ||
Masks | ![]() | 244.1 MB | ![]() | |
Others | ![]() ![]() ![]() | 193.1 MB 194.1 MB 194.1 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | Post processed map | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.95 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Mask #1
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Projections & Slices |
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Density Histograms |
-Additional map: Refine3D map
File | emd_25591_additional_1.map | ||||||||||||
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Annotation | Refine3D map | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Half map
File | emd_25591_half_map_1.map | ||||||||||||
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Annotation | Half map | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Half map
File | emd_25591_half_map_2.map | ||||||||||||
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Annotation | Half map | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : 40S ribosomal small subunit with HCV IRES
Entire | Name: 40S ribosomal small subunit with HCV IRES![]() |
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Components |
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-Supramolecule #1: 40S ribosomal small subunit with HCV IRES
Supramolecule | Name: 40S ribosomal small subunit with HCV IRES / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#39 |
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Source (natural) | Organism: ![]() ![]() ![]() |
Molecular weight | Theoretical: 2 MDa |
-Experimental details
-Structure determination
Method | ![]() |
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![]() | ![]() |
Aggregation state | particle |
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Sample preparation
Concentration | 0.000075 mg/mL |
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Buffer | pH: 7.5 |
Grid | Model: Quantifoil R0.6/1 / Material: GOLD / Mesh: 300 / Support film - Material: GOLD / Support film - topology: HOLEY / Support film - Film thickness: 50.0 nm / Pretreatment - Type: PLASMA CLEANING |
Vitrification | Cryogen name: ETHANE-PROPANE / Chamber humidity: 100 % / Chamber temperature: 277.15 K / Instrument: FEI VITROBOT MARK IV / Details: 4 second blot time, force 3. |
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Electron microscopy
Microscope | FEI TECNAI F30 |
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Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Sample stage | Cooling holder cryogen: NITROGEN |
Image recording | Film or detector model: GATAN K3 (6k x 4k) / Digitization - Sampling interval: 5.0 µm / Average exposure time: 4.0 sec. / Average electron dose: 70.9 e/Å2 |
Experimental equipment | ![]() Model: Tecnai F30 / Image courtesy: FEI Company |