[English] 日本語
Yorodumi- EMDB-16257: Cryo-EM structure of Toxoplasma gondii glideosome-associated connector -
+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-16257 | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | Cryo-EM structure of Toxoplasma gondii glideosome-associated connector | ||||||||||||||||||||||||
Map data | |||||||||||||||||||||||||
Sample |
| ||||||||||||||||||||||||
Keywords | actin-binding protein / armadillo repeat / solenoid / pleckstrin-homology domain / PROTEIN BINDING | ||||||||||||||||||||||||
Biological species | Toxoplasma gondii (eukaryote) | ||||||||||||||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 7.6 Å | ||||||||||||||||||||||||
Authors | Chen Q / Rosenthal P | ||||||||||||||||||||||||
Funding support | Finland, Norway, United Kingdom, 7 items
| ||||||||||||||||||||||||
Citation | Journal: To Be Published Title: Structure of Toxoplasma gondii glideosome-associated connector suggests a role as an elastic element to assist myosin A in generating force for gliding motility Authors: Hung YF / Chen Q / Pires I / Rosenthal P / Kursula I | ||||||||||||||||||||||||
History |
|
-Structure visualization
Supplemental images |
---|
-Downloads & links
-EMDB archive
Map data | emd_16257.map.gz | 28.4 MB | EMDB map data format | |
---|---|---|---|---|
Header (meta data) | emd-16257-v30.xml emd-16257.xml | 16.2 KB 16.2 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_16257_fsc.xml | 6.6 KB | Display | FSC data file |
Images | emd_16257.png | 36.2 KB | ||
Masks | emd_16257_msk_1.map | 30.5 MB | Mask map | |
Filedesc metadata | emd-16257.cif.gz | 6.3 KB | ||
Others | emd_16257_half_map_1.map.gz emd_16257_half_map_2.map.gz | 28.3 MB 28.3 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-16257 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-16257 | HTTPS FTP |
-Validation report
Summary document | emd_16257_validation.pdf.gz | 658.3 KB | Display | EMDB validaton report |
---|---|---|---|---|
Full document | emd_16257_full_validation.pdf.gz | 657.9 KB | Display | |
Data in XML | emd_16257_validation.xml.gz | 14 KB | Display | |
Data in CIF | emd_16257_validation.cif.gz | 17.7 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-16257 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-16257 | HTTPS FTP |
-Related structure data
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
---|
-Map
File | Download / File: emd_16257.map.gz / Format: CCP4 / Size: 30.5 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Voxel size | X=Y=Z: 1.61 Å | ||||||||||||||||||||
Density |
| ||||||||||||||||||||
Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
|
-Supplemental data
-Mask #1
File | emd_16257_msk_1.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-Half map: #1
File | emd_16257_half_map_1.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-Half map: #2
File | emd_16257_half_map_2.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-Sample components
-Entire : toxoplasma gondii glideosome-associated connector
Entire | Name: toxoplasma gondii glideosome-associated connector |
---|---|
Components |
|
-Supramolecule #1: toxoplasma gondii glideosome-associated connector
Supramolecule | Name: toxoplasma gondii glideosome-associated connector / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all |
---|---|
Source (natural) | Organism: Toxoplasma gondii (eukaryote) |
-Macromolecule #1: toxoplasma gondii glideosome-associated connector
Macromolecule | Name: toxoplasma gondii glideosome-associated connector / type: protein_or_peptide / ID: 1 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: Toxoplasma gondii (eukaryote) |
Recombinant expression | Organism: Escherichia coli (E. coli) |
Sequence | String: G(MSE)AIGKVKRN PDAGVATAVQ SVIQHQTFKR (MSE)LLFGLRSLA DFCSPSNQLY QENALDALDR GVLSAIQTAV TT FSDDDDL (MSE)LCASRVLWA (MSE)SVAIKEE(MSE)D PAHIARVHSE GSPVIVAVVN SSPTDPQTIE DS(MSE)NFVD NL KRAGAPVDGA ...String: G(MSE)AIGKVKRN PDAGVATAVQ SVIQHQTFKR (MSE)LLFGLRSLA DFCSPSNQLY QENALDALDR GVLSAIQTAV TT FSDDDDL (MSE)LCASRVLWA (MSE)SVAIKEE(MSE)D PAHIARVHSE GSPVIVAVVN SSPTDPQTIE DS(MSE)NFVD NL KRAGAPVDGA SLAGG(MSE)LSIF TKTALD(MSE)KTA KRVTAALAIA AETAEGSTAL YNAGGTSVLL TYCLDQGDLS DAGVE(MSE)VEG AFDTVRY(MSE)AG YQCTDATTLP QCIAL(MSE)DKYR GRKSASAKGS SALAA(MSE)IGPE QLQKC LNTL KTAEAGSAEY DEALVTLGS(MSE) SYISSFTDEI VRAGGVPLLI ELINSGLPQ(MSE) EGNPEKIAS(MSE) ISGA AK(MSE)LA RIASNPVNVD AIVQAGGVAT LCTAVSYCTE S(MSE)EALGALC(MSE) ALVPLASRES LAHEIVQYQT FAT VLPILY QNVESPEIAA LA(MSE)ELVATGS QHEEIQEH(MSE)L QNQAAEICSL CCQYHTADAS YQQHAISALN RLVPRL TTL HGVSEYGGIQ GVIASLNANV NNEQVALLAV QLLDNFSEVS DAKTY(MSE)SDGT CVDAVLAA(MSE)L EHEGNDLLI SAGVHCLARI ATEDDCARHL NVLDTAIQTA RGNPDGVYRV LAAISGLSRV PSLRQIFEEK NASDTILAGI SSWIECSRFE GQNRIIKAA LKTVKN(MSE)KIS GDGDLTSCFA A(MSE)CDVACLPQ VKRVVELEEP DNNILVADTA AFRDLAAT(MSE) RITGAENLER CIESVLRV(MSE)R KYPDSRRAQL NCLETLNYLA QCDGGEGVAI LSRTGGLNAV VQYLTRAP(MSE)Y LD AQIAGFT VLATSAKIDS NVGETLRKCN CLQALKVA(MSE)R THAKSKELKR TIAPLVALL(MSE) PTDALETEIQ ELLNE CASA CEKNNFPHLH ENLAALNELL ISSEGAKIAA RLGIGAH(MSE)CK YQEYISAHEQ DALAVTDYDI LGKDLFDATV SE CAHA(MSE)EQ VASTRSGRNA LIKAGNVATL ISLYESLKAP QSQYSEEAAI HCLEALRILL KSDKRSAELA FERNFVSTL CVGIDSFPHS APVLGATCAC LAA(MSE)ATTPER VQ(MSE)LTAQPAF ESLLQKLVFV IQNDPSKDNK LVA(MSE)RALQ E LVEITNDAT(MSE) ANKIAEAGAV TALFRIIDEY GDDEQLTVQA AEVLALLGAF EDLRRFYDND VRFPAQVLTA ALTKQ KNNE TAVVHLLDVL NKLATSEDRA VLRELGV(MSE)EQ VADA(MSE)RVHSE SEAVTRLGGE LFAK(MSE)GADEQ IKSL (MSE)LQII ETVESGAEDT AQTVDILCGR LAVFLAAPLE DPRDALQHTE KCLGSLVATL QTYPGSERLE GNVALVCRRL C DRCFDDAD DPYGAWAVAA SG(MSE)LAQFAG(MSE) VAGETVLANK KFLGPAYRTF TACCANAYC(MSE) PT(MSE)VEV APS FLPQTYTLLE (MSE)HKNDAETVA RVLEFLRYFA EDPTACGLIV QN(MSE)SGSSGDV VALTVLL(MSE)QQ HQNND AVVC AG(MSE)EFLGALA YTLSQAGYEP LPTLADGSVL RDCDAL(MSE)GSN SSSARQLAH(MSE) H(MSE)IEK(MSE) LLS KAYNDALIQE QALKKLT(MSE)SL KAEDDKKRFS DEERAGLYAA (MSE)ACVLLAAGG AGLTGE(MSE)EKF NGFEV VLQA IEEFGENPTV IKEVNRALQG LS(MSE)ADVN(MSE)TA RTVKEAVPKL CTEATTAIQT DAECADTFCD L(MSE)LQ LVSQE GNGRQLLQVY GLEETLQGVE NLAAYYGEDF GTQLSEKVA(MSE) IRQA(MSE)EDDQP REKTCKDVYD LLNSRVQ QG LSVAISEVAI LQEEVEFLVS Q(MSE)G(MSE)YNQEQL DHQTA(MSE)GADH QYGN(MSE)AFELL AATSANVKLL QA NEFSK(MSE)E LALIKGQADP EIVLYAVKAL TAFCKFPPAA QDTARIQGCP ALVTEACSKI NKSGLPNERK EEHLCARYF LVERTAINRN LYNKTPI(MSE)TE LINSWNDYDK GAYTTTLLRF VFRA(MSE)RRVVS DAHVEELLKA NVLQRLIGII SD VNAD(MSE)AL LPDVLFLLGS LAVVPEIKTK IGELNGIAAC TDLLQRALPK PNTAPVVTNV CLAFANICIG HKKNTEIFS KLGGPALNVK VLNDRGHEYD VCNAASVLLC NLLYKNES(MSE)K KLLGTNGAPA ALVKGLSNYD GSEEKTAIRC LESVFK AIS NLSLYTPNIQ PFLDAGIENA YSTWLSNLSE TFPDAQLETG CRTLVNLV(MSE)E NEENN(MSE)RKFG VCLLPC (MSE)AV AKQGRTDTKA LLLLLDIEAS LCRLKENAEA FAANGGIETT IRLIHQFDYD VGLLTLGIHL LGIQSAVKDS IQR (MSE)(MSE)DADV FSILVGCVEV DAEGNEVTDL VVGGLRCTRR IVRSEELAFE YCNAGGIATI ANVICKSINQ P(MSE) V(MSE)LEACR VLLGLLFYTT RSQADRQAAV EALHAQCQQR AEQ(MSE)HAQAQA DYEAGVVSEP PPEE(MSE)EVPEP D PDELANAA YGGWYQ(MSE)G(MSE)D EV(MSE)IDAILQA VCACAAVEAH AKQLRLQRVC LGLAAYFASE Q(MSE)GTSS LVG SGIEQVLTQI (MSE)TNFAGEGTT (MSE)QLSCVIINS IA(MSE)TSGD(MSE)YE EIKTSALLSA LKTSVGK (MSE)A TKKPEEKALK ETCAATLEAA SSGEDPFDAF SKTVTELDFK FTEWNVDPYP NGVHDLPSNV KEALRKGGKL KVFL PEKEK EEIRWRSSQD LNVFEWC(MSE)GN DQDYNNRIPI VRIRNVAKGL VHPALKAAAK KEPRKVAAKF T(MSE)CLFGP PN DDFPEGVELP (MSE)VAKSQKERD AFVE(MSE)(MSE)VQWR DAATYNFHHH HHH |
-Experimental details
-Structure determination
Method | cryo EM |
---|---|
Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 8 |
---|---|
Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TALOS ARCTICA |
---|---|
Image recording | Film or detector model: FEI FALCON III (4k x 4k) / Detector mode: INTEGRATING / Average electron dose: 70.0 e/Å2 |
Electron beam | Acceleration voltage: 200 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 3.5 µm / Nominal defocus min: 1.5 µm |
Experimental equipment | Model: Talos Arctica / Image courtesy: FEI Company |