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- ChemComp-U2P: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)... -

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Basic information

EntryDatabase: PDB chemical components / ID: U2P
NameName: phosphoric acid mono-[2-(2,4-dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-4-hydroxy-5-hydroxymethyl-tetrahydro-furan-3-yl]
Synonyms: URIDINE-2'-PHOSPHATE; 2'-URIDINEMONOPHOSPHATE

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Chemical information

Composition
Formula: C9H13N2O9P / Number of atoms: 34 / Formula weight: 324.181 / Formal charge: 0
Others

1o0m

U

Type: RNA LINKING / PDB classification: ATOMN / One letter code: U / Three letter code: U2P / Model coordinates PDB-ID: 1O0M / Parent comp.: U
History
Create componentFeb 26, 2003
Modify descriptorJun 4, 2011
Modify synonymsJun 5, 2020
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 10.04O=C1NC(=O)N(C=C1)C2OC(C(O)C2OP(=O)(O)O)CO
CACTVS 3.341OC[CH]1O[CH]([CH](O[P](O)(O)=O)[CH]1O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.5.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)OP(=O)(O)O

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SMILES CANONICAL

CACTVS 3.341OC[C@H]1O[C@H]([C@H](O[P](O)(O)=O)[C@@H]1O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.5.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)OP(=O)(O)O

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InChI

InChI 1.03InChI=1S/C9H13N2O9P/c12-3-4-6(14)7(20-21(16,17)18)8(19-4)11-2-1-5(13)10-9(11)15/h1-2,4,6-8,12,14H,3H2,(H,10,13,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

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InChIKey

InChI 1.03HQIDPEYTETUCNF-XVFCMESISA-N

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SYSTEMATIC NAME

ACDLabs 10.042'-uridylic acid
OpenEye OEToolkits 1.5.0[(2R,3R,4R,5R)-2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate

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PDB entries

Showing all 6 items

PDB-1o0m:
Ribonuclease A in complex with uridine-2'-phosphate

PDB-1uca:
Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 2'-UMP

PDB-1vd3:
Ribonuclease NT in complex with 2'-UMP

PDB-1z4j:
Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with uridine 2'-monophosphate

PDB-3djo:
Bovine Seminal Ribonuclease uridine 2' phosphate complex

PDB-4dvn:
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 2'-UMP

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