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Yorodumi- SASDFB5: Phosphorylated Resistance to inhibitors of cholinesterase 8 homol... -
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-Basic information
Entry | Database: SASBDB / ID: SASDFB5 |
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Sample | Phosphorylated Resistance to inhibitors of cholinesterase 8 homolog A, Ric-8A, amino acids 1-452 (Rattus norvegicus)
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Function / homology | Function and homology information cell-cell adhesion involved in gastrulation / cell migration involved in gastrulation / basement membrane organization / vasculature development / G-protein alpha-subunit binding / adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway / guanyl-nucleotide exchange factor activity / visual learning / in utero embryonic development / plasma membrane / cytoplasm Similarity search - Function |
Biological species | Rattus norvegicus (Norway rat) |
Citation | Journal: Structure / Year: 2019 Title: Structure, Function, and Dynamics of the Gα Binding Domain of Ric-8A. Authors: Baisen Zeng / Tung-Chung Mou / Tzanko I Doukov / Andrea Steiner / Wenxi Yu / Makaia Papasergi-Scott / Gregory G Tall / Franz Hagn / Stephen R Sprang / Abstract: Ric-8A is a 530-amino acid cytoplasmic molecular chaperone and guanine nucleotide exchange factor (GEF) for i, q, and 12/13 classes of heterortrimeric G protein alpha subunits (Gα). We report the 2. ...Ric-8A is a 530-amino acid cytoplasmic molecular chaperone and guanine nucleotide exchange factor (GEF) for i, q, and 12/13 classes of heterortrimeric G protein alpha subunits (Gα). We report the 2.2-Å crystal structure of the Ric-8A Gα-binding domain with GEF activity, residues 1-452, and is phosphorylated at Ser435 and Thr440. Residues 1-429 adopt a superhelical fold comprised of Armadillo (ARM) and HEAT repeats, and the C terminus is disordered. One of the phosphorylated residues potentially binds to a basic cluster in an ARM motif. Amino acid sequence conservation and published hydrogen-deuterium exchange data indicate repeats 3 through 6 to be a putative Gα-binding surface. Normal mode modeling of small-angle X-ray scattering data indicates that phosphorylation induces relative rotation between repeats 1-4, 5-6, and 7-9. 2D H-N-TROSY spectra of [H,N]-labeled Gαi1 in the presence of R452 reveals chemical shift perturbations of the C terminus and Gαi1 residues involved in nucleotide binding. |
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-Structure visualization
-Downloads & links
-Data source
SASBDB page | SASDFB5 |
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-Related structure data
Related structure data | 6nmgC 6nmjC C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Models
-Sample
Sample | Name: Phosphorylated Resistance to inhibitors of cholinesterase 8 homolog A, Ric-8A, amino acids 1-452 (Rattus norvegicus) Specimen concentration: 1 mg/ml |
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Buffer | Name: 25mM HEPES, 150mM NaCl / pH: 8 |
Entity #1606 | Name: Ric-8A / Type: protein Description: Resistance to inhibitors of cholinesterase 8 homolog A Formula weight: 51.09 / Num. of mol.: 1 / Source: Rattus norvegicus / References: UniProt: B1H241 Sequence: GMEPRAVADA LETGEEDAVT EALRSFNREH SQSFTFDDAQ QEDRKRLAKL LVSVLEQGLS PKHRVTWLQT IRILSRDRSC LDSFASRQSL HALACYADIA ISEEPIPQPP DMDVLLESLK CLCNLVLSSP TAQMLAAEAR LVVRLAERVG LYRKRSYPHE VQFFDLRLLF ...Sequence: GMEPRAVADA LETGEEDAVT EALRSFNREH SQSFTFDDAQ QEDRKRLAKL LVSVLEQGLS PKHRVTWLQT IRILSRDRSC LDSFASRQSL HALACYADIA ISEEPIPQPP DMDVLLESLK CLCNLVLSSP TAQMLAAEAR LVVRLAERVG LYRKRSYPHE VQFFDLRLLF LLTALRTDVR QQLFQELHGV RLLTDALELT LGVAPKENPL VILPAQETER AMEILKVLFN ITFDSVKREV DEEDAALYRY LGTLLRHCVM ADAAGDRTEE FHGHTVNLLG NLPLKCLDVL LALELHEGSL EFMGVNMDVI NALLAFLEKR LHQTHRLKEC VAPVLSVLTE CARMHRPARK FLKAQVLPPL RDVRTRPEVG DLLRNKLVRL MTHLDTDVKR VAAEFLFVLC SESVPRFIKY TGYGNAAGLL AARGLMAGGR PEGQYSEDED TDTEEYREAK ASI |
-Experimental information
Beam | Instrument name: Stanford Synchrotron Radiation Lightsource (SSRL) BL4-2 City: Menlo Park, CA / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.1127 Å / Dist. spec. to detc.: 1.7 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Rayonix MX225-HE | ||||||||||||||||||||||||||||||
Scan | Title: Phosphorylated Resistance to inhibitors of cholinesterase 8 homolog A, Ric-8A, amino acids 1-452 (Rattus norvegicus) Measurement date: Apr 24, 2018 / Storage temperature: 4 °C / Cell temperature: 23 °C / Exposure time: 1 sec. / Number of frames: 25 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 319 /
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Result | Type of curve: sec /
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