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Yorodumi- SASDE82: Ribonuclease E from Burkholderia pseudomallei (Endoribonuclease E... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDE82 |
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Sample | Ribonuclease E from Burkholderia pseudomallei
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Function / homology | Function and homology information ribonuclease E / ribonuclease E activity / tRNA processing / mRNA catabolic process / RNA endonuclease activity / cytoplasmic side of plasma membrane / rRNA processing / tRNA binding / rRNA binding / magnesium ion binding ...ribonuclease E / ribonuclease E activity / tRNA processing / mRNA catabolic process / RNA endonuclease activity / cytoplasmic side of plasma membrane / rRNA processing / tRNA binding / rRNA binding / magnesium ion binding / zinc ion binding / cytoplasm Similarity search - Function |
Biological species | Burkholderia pseudomallei (bacteria) |
Citation | Date: 2019 Dec Title: A structural and biochemical comparison of Ribonuclease E homologues from pathogenic bacteria highlights species-specific properties Authors: Mardle C / Shakespeare T / Butt L / Goddard L / Gowers D / Atkins H / Vincent H |
Contact author |
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-Structure visualization
-Downloads & links
-Data source
SASBDB page | SASDE82 |
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-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-External links
Related items in Molecule of the Month |
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-Models
-Sample
Sample | Name: Ribonuclease E from Burkholderia pseudomallei / Specimen concentration: 6.41 mg/ml |
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Buffer | Name: 10 mM DTT, 10 mM MgCl2, 0.5 M NaCl, 20 mM Tris / pH: 8 |
Entity #1206 | Name: RNase E / Type: protein / Description: Endoribonuclease E / Formula weight: 62.584 / Num. of mol.: 4 / Source: Burkholderia pseudomallei / References: UniProt: A0A0H3HN63 Sequence: HHHHHHHHHH SSGHIEGRHM KRMLFNATQQ EELRVAIVDG QKLIDIDIET AGREQRKGNI YKGVVTRIEP SLEACFVNYG EDRHGFLPFK EVARQYFKEG VDMRSARIQD ALREGQELIV QVEKEERGNK GAALTTFISL AGRYLVLMPN NPRGGGVSRR IEGDERQELR ...Sequence: HHHHHHHHHH SSGHIEGRHM KRMLFNATQQ EELRVAIVDG QKLIDIDIET AGREQRKGNI YKGVVTRIEP SLEACFVNYG EDRHGFLPFK EVARQYFKEG VDMRSARIQD ALREGQELIV QVEKEERGNK GAALTTFISL AGRYLVLMPN NPRGGGVSRR IEGDERQELR ETMAQLQIPD GMSMIARTAG IGRSAEELQW DLNYLLQLWR AIEAASQSGH PGQPMLIYLE SSLVIRAIRD YFQPDIGEIL IDTTEIHDQA RAFMDIVMPD NVGKVKRYHD DVPLFSRFQI EHQIETAYSR TVPLPSGGAI VIDHTEALVA IDVNSARATK GADIEETATR TNLEAADEVA RQLRLRDLGG LIVIDFIDME SAKSQREVEQ RLKDALKHDR ARVQMGKISR FGLMELSRQR LRPALSEGSH VTCPRCNGTG HIRDTESSAL QVLRIIQEEA MKENTAAIHC QVPVEVTAFL LNEKRQEINK IESRFKVGVV LIPNKHLDTP HYKLERLRHD DARLDDPRAS WKMAEEAARE LEAETGYSKR AEETKPRQEA A |
-Experimental information
Beam | Instrument name: Diamond Light Source B21 / City: Oxfordshire / 国: UK / Shape: 1 x 5 mm / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 4.014 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 2M | ||||||||||||||||||||||||||||||
Scan | Title: Ribonuclease E from Burkholderia pseudomallei / Measurement date: Feb 11, 2017 / Storage temperature: 21 °C / Cell temperature: 15 °C / Exposure time: 3 sec. / Number of frames: 640 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 653 /
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Result | Type of curve: single_conc /
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