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- SASDDM6: Calbindin-D28K (Calbindin, CALB1) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDDM6
SampleCalbindin-D28K
  • Calbindin (protein), CALB1, Homo sapiens
Function / homology
Function and homology information


metanephric connecting tubule development / calcium ion binding involved in regulation of presynaptic cytosolic calcium ion concentration / calcium ion binding involved in regulation of postsynaptic cytosolic calcium ion concentration / metanephric distal convoluted tubule development / metanephric part of ureteric bud development / cuticular plate / retina layer formation / response to auditory stimulus / short-term memory / vitamin D binding ...metanephric connecting tubule development / calcium ion binding involved in regulation of presynaptic cytosolic calcium ion concentration / calcium ion binding involved in regulation of postsynaptic cytosolic calcium ion concentration / metanephric distal convoluted tubule development / metanephric part of ureteric bud development / cuticular plate / retina layer formation / response to auditory stimulus / short-term memory / vitamin D binding / stereocilium / metanephric collecting duct development / cochlea development / postsynaptic cytosol / long-term memory / presynaptic cytosol / calyx of Held / hippocampal mossy fiber to CA3 synapse / GABA-ergic synapse / locomotory behavior / terminal bouton / regulation of synaptic plasticity / Amyloid fiber formation / axon / neuronal cell body / synapse / dendrite / calcium ion binding / glutamatergic synapse / extracellular exosome / zinc ion binding / nucleus / cytosol
Similarity search - Function
Calbindin / : / EF hand domain / EF-hand domain pair / EF-hand, calcium binding motif / EF-Hand 1, calcium-binding site / EF-hand calcium-binding domain. / EF-hand calcium-binding domain profile. / EF-hand domain / EF-hand domain pair
Similarity search - Domain/homology
Biological speciesHomo sapiens (human)
CitationDate: 2018 Oct 1
Title: The X-ray structure of human calbindin-D28K: an improved model
Authors: Noble J / Almalki R / Roe S / Wagner A / Duman R
Contact author
  • James Noble (University of Sussex, Brighton, UK)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2033
Type: dummy / Software: (dammif) / Radius of dummy atoms: 2.50 A / Chi-square value: 1.156 / P-value: 0.172169
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Calbindin-D28K / Specimen concentration: 12.2 mg/ml
BufferName: 20 mM Tris, 150mM NaCl / pH: 7.8
Entity #1078Name: CALB1 / Type: protein / Description: Calbindin / Formula weight: 30.316 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: P05937
Sequence: GPHMAESHLQ SSLITASQFF EIWLHFDADG SGYLEGKELQ NLIQELQQAR KKAGLELSPE MKTFVDQYGQ RDDGKIGIVE LAHVLPTEEN FLLLFRCQQL KSCEEFMKTW RKYDTDHSGF IETEELKNFL KDLLEKANKT VDDTKLAEYT DLMLKLFDSN NDGKLELTEM ...Sequence:
GPHMAESHLQ SSLITASQFF EIWLHFDADG SGYLEGKELQ NLIQELQQAR KKAGLELSPE MKTFVDQYGQ RDDGKIGIVE LAHVLPTEEN FLLLFRCQQL KSCEEFMKTW RKYDTDHSGF IETEELKNFL KDLLEKANKT VDDTKLAEYT DLMLKLFDSN NDGKLELTEM ARLLPVQENF LLKFQGIKMC GKEFNKAFEL YDQDGNGYID ENELDALLKD LCEKNKQDLD INNITTYKKN IMALSDGGKL YRTDLALILC AGDN

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Experimental information

BeamInstrument name: Diamond Light Source B21 / City: Oxfordshire / 国: UK / Shape: 1 x 5 mm / Type of source: X-ray synchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 4 mm
DetectorName: Pilatus 2M
Scan
Title: Calbindin-D28K / Measurement date: Feb 28, 2018 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 3 sec. / Number of frames: 14 / Unit: 1/A /
MinMax
Q0.0037 0.3696
Distance distribution function P(R)
Sofotware P(R): GNOM 4.5a / Number of points: 394 /
MinMax
Q0.01196 0.369
P(R) point1 394
R0 69.53
Result
Type of curve: sec /
ExperimentalPorod
MW25 kDa29 kDa
Volume-46 nm3

P(R)GuinierGuinier error
Forward scattering, I00.08571 0.08563 0.0001
Radius of gyration, Rg2.14 nm2.142 nm0.005

MinMax
D-6.95
Guinier point38 259

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