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- SASDCJ7: C-terminal domain of DsbD from N. meningitidis (thiol-disulfide e... -

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Basic information

Entry
Database: SASBDB / ID: SASDCJ7
SampleC-terminal domain of DsbD from N. meningitidis
  • thiol-disulfide exchange protein (protein), alpha-DsbN, Wolbachia endosymbiont of Drosophila melanogaster
Function / homologyThioredoxin / Thioredoxin-like fold / Thioredoxin-like superfamily / periplasmic space / DsbA-like disulfide oxidoreductase
Function and homology information
Biological speciesWolbachia endosymbiont of Drosophila melanogaster (bacteria)
CitationDate: 2018 Jan 1
Title: Production, biophysical characterization and initial crystallization studies of the N- and C-terminal domains of DsbD, an essential enzyme in Neisseria meningitidis
Authors: Smith R / Whitten A / Paxman J / Kahler C / Scanlon M
Contact author
  • Andrew Whitten (ANSTO, Australian Nuclear Science and Technology Organisation, Kirrawee DC, NSW 2232, Australia)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1529
Type: dummy / Software: (5.3) / Radius of dummy atoms: 1.25 A / Chi-square value: 1.593 / P-value: 0.034800
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: C-terminal domain of DsbD from N. meningitidis / Specimen concentration: 0.30-4.50
BufferName: 25mM HEPES 150mM NaCl / pH: 6.7
Entity #793Name: alpha-DsbN / Type: protein / Description: thiol-disulfide exchange protein / Formula weight: 21.091 / Num. of mol.: 1 / Source: Wolbachia endosymbiont of Drosophila melanogaster / References: UniProt: Q73FL6
Sequence:
SNAARDNVTK SKISQYKDQI FDLTYPYSGN ENSSVIAVGF LDYSCGHCKA IKNDIKQLIN DGKIKYIFRD APILGNASLK AAKSALAVYF LNKEKYFDFH HAALSHKGEF SDESILDIVK NIGIDEDDFN DSIKDNADKI EQMINNSRLL VRDLGVGGTP FLIIGDSLFV GATDLNVLRK KVDELSHKQG

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Experimental information

BeamInstrument name: Australian Synchrotron SAXS/WAXS / City: Melbourne / 国: Australia / Shape: Point / Type of source: X-ray synchrotron / Wavelength: 0.1127 Å / Dist. spec. to detc.: 1.48 mm
DetectorName: Pilatus 1M
Scan
Title: C-terminal domain of DsbD from N. meningitidis / Measurement date: May 4, 2013 / Storage temperature: 4 °C / Cell temperature: 12 °C / Exposure time: 2 sec. / Number of frames: 30 / Unit: 1/A /
MinMax
Q0.0136 0.399
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 301 /
MinMax
Q0.01101 0.399
P(R) point2 302
R0 45
Result
Type of curve: single_conc
ExperimentalStandardStandard errorPorod
MW11.8 kDa11.8 kDa1 12 kDa
Volume---14.6 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.009905 1.1E-5 0.00997 2.0E-5
Radius of gyration, Rg14.8 nm0.1 1.53 nm0.01

MinMaxError
D-4.5 0.3
Guinier point2 44 -

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