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- SASDC67: SaPIbov1 pathogenicity island repressor (Stl) -

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Basic information

Entry
Database: SASBDB / ID: SASDC67
SampleSaPIbov1 pathogenicity island repressor
  • SaPIbov1 pathogenicity island repressor (protein), Stl, Staphylococcus aureus
Function / homologyHelix-turn-helix / Helix-turn-helix XRE-family like proteins / Cro/C1-type HTH domain profile. / Cro/C1-type helix-turn-helix domain / Lambda repressor-like, DNA-binding domain superfamily / DNA binding / Stl
Function and homology information
Biological speciesStaphylococcus aureus (bacteria)
CitationDate: 2018 Mar 12
Title: Structural model of human dUTPase in complex with a novel proteinaceous inhibitor
Authors: Nyíri K / Mertens H / Tihanyi B / Nagy G / Kőhegyi B / Matejka J / Harris M / Szabó J / Papp-Kádár V / Németh-Pongrácz V / Ozohanics O / Vékey K / Svergun D / Borysik A
Contact author
  • Haydyn Mertens (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #1487
Type: atomic / Software: (2.0) / Radius of dummy atoms: 1.90 A / Symmetry: P2
Comment: server address: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index
Chi-square value: 0.622
Search similar-shape structures of this assembly by Omokage search (details)
Model #1488
Type: dummy / Software: (2.9.0) / Radius of dummy atoms: 2.20 A / Symmetry: P2 / Chi-square value: 0.605
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: SaPIbov1 pathogenicity island repressor / Dry vol: 38738 / Specimen concentration: 0.20-0.90 / Concentration method: A280
BufferName: 50 mM HEPES 300 mM NaCl 5 mM MgCl2 / pH: 7.5 / Comment: Buffer B
Entity #776Name: Stl / Type: protein / Description: SaPIbov1 pathogenicity island repressor / Formula weight: 32.016 / Num. of mol.: 2 / Source: Staphylococcus aureus / References: UniProt: E2FZP6
Sequence: GSPEFSMEGA GQMAELPTHY GTIIKTLRKY MKLTQSKLSE RTGFSQNTIS NHENGNRNIG VNEIEIYGKG LGIPSYILHR ISDEFKEKGY SPTLNDFGKF DKMYSYVNKA YYNDGDIYYS SYDLYDETIK LLELLKESKI NVNDIDYDYV LKLYKQILST DTEKSIINYE ...Sequence:
GSPEFSMEGA GQMAELPTHY GTIIKTLRKY MKLTQSKLSE RTGFSQNTIS NHENGNRNIG VNEIEIYGKG LGIPSYILHR ISDEFKEKGY SPTLNDFGKF DKMYSYVNKA YYNDGDIYYS SYDLYDETIK LLELLKESKI NVNDIDYDYV LKLYKQILST DTEKSIINYE TLANTRKSSD KKREVTIEEI GEFHEKYLKL LFTNLETHND RKKALAEIEK LKEESIYLGE KLRLVPNHHY DAIKGKPMYK LYLYEYPDRL EHQKKIILEK DTN

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Experimental information

BeamInstrument name: PETRA III EMBL P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3.1 mm
DetectorName: Pilatus 2M
Scan
Title: stl / Measurement date: Jul 9, 2016 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 0.05 sec. / Number of frames: 20 / Unit: 1/nm /
MinMax
Q0.1185 5.0307
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1191 /
MinMax
Q0.143262 3.42176
P(R) point1 1191
R0 10.5
Result
Type of curve: merged / Standard: BSA
ExperimentalExperimental errorStandardStandard errorPorodPorod errorEstimatedEstimated errorEstimated method
MW45 kDa5 45 kDa5 59 kDa6 ---
Volume----100 nm320 90 20 DAM volume

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.032 0.001 0.031 0.001
Radius of gyration, Rg3.2 nm0.1 3.3 nm0.1

MinMaxError
D-10.5 0.5
Guinier point1 93 -

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