+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDC67 |
---|---|
Sample | SaPIbov1 pathogenicity island repressor
|
Function / homology | Helix-turn-helix / Helix-turn-helix XRE-family like proteins / Cro/C1-type HTH domain profile. / Cro/C1-type helix-turn-helix domain / Lambda repressor-like, DNA-binding domain superfamily / DNA binding / Stl Function and homology information |
Biological species | Staphylococcus aureus (bacteria) |
Citation | Date: 2018 Mar 12 Title: Structural model of human dUTPase in complex with a novel proteinaceous inhibitor Authors: Nyíri K / Mertens H / Tihanyi B / Nagy G / Kőhegyi B / Matejka J / Harris M / Szabó J / Papp-Kádár V / Németh-Pongrácz V / Ozohanics O / Vékey K / Svergun D / Borysik A |
Contact author |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Data source
SASBDB page | SASDC67 |
---|
-Related structure data
Related structure data | C: citing same article (ref.) |
---|---|
Similar structure data |
-External links
Related items in Molecule of the Month |
---|
-Models
Model #1487 | Type: atomic / Software: (2.0) / Radius of dummy atoms: 1.90 A / Symmetry: P2 Comment: server address: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index Chi-square value: 0.622 Search similar-shape structures of this assembly by Omokage search (details) |
---|---|
Model #1488 | Type: dummy / Software: (2.9.0) / Radius of dummy atoms: 2.20 A / Symmetry: P2 / Chi-square value: 0.605 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: SaPIbov1 pathogenicity island repressor / Dry vol: 38738 / Specimen concentration: 0.20-0.90 / Concentration method: A280 |
---|---|
Buffer | Name: 50 mM HEPES 300 mM NaCl 5 mM MgCl2 / pH: 7.5 / Comment: Buffer B |
Entity #776 | Name: Stl / Type: protein / Description: SaPIbov1 pathogenicity island repressor / Formula weight: 32.016 / Num. of mol.: 2 / Source: Staphylococcus aureus / References: UniProt: E2FZP6 Sequence: GSPEFSMEGA GQMAELPTHY GTIIKTLRKY MKLTQSKLSE RTGFSQNTIS NHENGNRNIG VNEIEIYGKG LGIPSYILHR ISDEFKEKGY SPTLNDFGKF DKMYSYVNKA YYNDGDIYYS SYDLYDETIK LLELLKESKI NVNDIDYDYV LKLYKQILST DTEKSIINYE ...Sequence: GSPEFSMEGA GQMAELPTHY GTIIKTLRKY MKLTQSKLSE RTGFSQNTIS NHENGNRNIG VNEIEIYGKG LGIPSYILHR ISDEFKEKGY SPTLNDFGKF DKMYSYVNKA YYNDGDIYYS SYDLYDETIK LLELLKESKI NVNDIDYDYV LKLYKQILST DTEKSIINYE TLANTRKSSD KKREVTIEEI GEFHEKYLKL LFTNLETHND RKKALAEIEK LKEESIYLGE KLRLVPNHHY DAIKGKPMYK LYLYEYPDRL EHQKKIILEK DTN |
-Experimental information
Beam | Instrument name: PETRA III EMBL P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3.1 mm | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Detector | Name: Pilatus 2M | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Scan | Title: stl / Measurement date: Jul 9, 2016 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 0.05 sec. / Number of frames: 20 / Unit: 1/nm /
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 1191 /
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Result | Type of curve: merged / Standard: BSA
|