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- SASDB47: Full length tetrameric FKBP39 protein from Drosophila melanogaster -

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Basic information

Entry
Database: SASBDB / ID: SASDB47
SampleFull length tetrameric FKBP39 protein from Drosophila melanogaster
  • 39 kDa FK506-binding nuclear protein (protein), FKBP39, Drosophila melanogaster
Function / homology
Function and homology information


juvenile hormone response element binding / juvenile hormone mediated signaling pathway / macrolide binding / negative regulation of macroautophagy / FK506 binding / heterochromatin / negative regulation of autophagy / peptidylprolyl isomerase / peptidyl-prolyl cis-trans isomerase activity / chromatin / nucleolus
Similarity search - Function
Peptidyl-prolyl cis-trans isomerase Fpr3/Fpr4-like / Nucleoplasmin-like domain / Nucleoplasmin-like domain / FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. / FKBP-type peptidyl-prolyl cis-trans isomerase domain / FKBP-type peptidyl-prolyl cis-trans isomerase / Peptidyl-prolyl cis-trans isomerase domain superfamily
Similarity search - Domain/homology
39 kDa FK506-binding nuclear protein
Similarity search - Component
Biological speciesDrosophila melanogaster (fruit fly)
CitationDate: 2017 Jan 11
Title: Nucleoplasmin-like domain of FKBP39 from Drosophila melanogaster forms a tetramer with partly disordered tentacle-like C-terminal segments
Authors: Kozłowska M / Tarczewska A / Jakób M / Bystranowska D / Taube M / Kozak M / Czarnocki-Cieciura M / Dziembowski A / Orłowski M / Tkocz K
Contact author
  • Michal Taube (AMU, Adam Mickiewicz University in Poznań, Poznań, Poland)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #783
Type: atomic / Software: (2.0) / Symmetry: P4 / Chi-square value: 0.374544 / P-value: 0.008000
Search similar-shape structures of this assembly by Omokage search (details)
Model #784
Type: atomic / Software: (2.0) / Symmetry: P4 / Chi-square value: 0.374544 / P-value: 0.008000
Search similar-shape structures of this assembly by Omokage search (details)
Model #785
Type: atomic / Software: (2.0) / Symmetry: P1 / Chi-square value: 0.374544 / P-value: 0.008000
Search similar-shape structures of this assembly by Omokage search (details)
Model #786
Type: atomic / Software: (2.0) / Symmetry: P1 / Chi-square value: 0.374544 / P-value: 0.008000
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Full length tetrameric FKBP39 protein from Drosophila melanogaster
Specimen concentration: 3 mg/ml
BufferName: 50 mM Na2HPO4 150 mM NaCl / pH: 7
Entity #432Name: FKBP39 / Type: protein / Description: 39 kDa FK506-binding nuclear protein / Formula weight: 40.826 / Num. of mol.: 4 / Source: Drosophila melanogaster / References: UniProt: P54397
Sequence: MGSSMFWGLN MKPERKYSQT IIKSFHISGV ALDKGQEAKL YLAAEKQEYI VATVTKAIPQ VALDLNFSKG DRIMFYTAGD ASVSLLGYLH DIDSEDDEDD DQMTIENLLN SKAIKNSKKS EDDEDENESG EEDEEDTDDD SQIIEEYESF LENGEEEDDD DVDEDNEESG ...Sequence:
MGSSMFWGLN MKPERKYSQT IIKSFHISGV ALDKGQEAKL YLAAEKQEYI VATVTKAIPQ VALDLNFSKG DRIMFYTAGD ASVSLLGYLH DIDSEDDEDD DQMTIENLLN SKAIKNSKKS EDDEDENESG EEDEEDTDDD SQIIEEYESF LENGEEEDDD DVDEDNEESG EEDEQDSDDS EAEEEQPKAK VAKLSPGASA KKSGKEQNGV AKKEEAKQQQ KKKEKPEAKK EQPKAKEPAK QQPASKDPRT ITGGVKIVDQ VVGKGEEAKQ GKRVSVYYIG RLQSNNKTFD SLLKGKPFKF ALGGGEVIKG WDVGVAGMKV GGKRVITCPP HMAYGARGAP PKIGPNSTLV FEVELKAVHK LHHHHHHHH

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Experimental information

BeamInstrument name: Diamond Light Source B21 / City: Oxfordshire / 国: UK / Shape: 1 x 5 mm / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 3.9 mm
DetectorName: Pilatus 2M
Scan
Title: Full length tetrameric FKBP39 protein / Measurement date: Nov 14, 2014 / Cell temperature: 10 °C / Exposure time: 10 sec. / Number of frames: 18 / Unit: 1/A /
MinMax
Q0.0026 0.4009
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 360 /
MinMax
Q0.004221 0.3
P(R) point6 365
R0 220
Result
Type of curve: single_conc
Comments: Modeling of the full length FKBP39 protein from low resolution structure was performed using Ensemble Optimization Method (EOM). EOM models were then processed by PD2 ca2main program to ...Comments: Modeling of the full length FKBP39 protein from low resolution structure was performed using Ensemble Optimization Method (EOM). EOM models were then processed by PD2 ca2main program to generate models that have replaced bead residues by C-alpha backbone. The molecular weight of the protein was estimated using I(0) value obtained for the CS domain of barley SGT1. Molecular weight obtained using MoW (Fischer et al) is 158 kDa. In addition, a zip file containing models of the final EOM ensemble as well as the final Rg and Dmax distributions are available in the full entry zip archive.
ExperimentalStandardPorod
MW158 kDa160.8 kDa161 kDa
Volume--275 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.05185 0.0002 0.052 0.0003
Radius of gyration, Rg5.796 nm0.032 5.69 nm0.1

MinMax
D-22
Guinier point7 48

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