+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDA96 |
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Sample | Lysozyme
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Function / homology | Function and homology information Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium ...Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / defense response to bacterium / endoplasmic reticulum / extracellular space / identical protein binding / cytoplasm Similarity search - Function |
Biological species | Gallus gallus (chicken) |
Citation | Journal: Nat Methods / Year: 2015 Title: Correlation Map, a goodness-of-fit test for one-dimensional X-ray scattering spectra. Authors: Daniel Franke / Cy M Jeffries / Dmitri I Svergun / Abstract: Assessing similarity between data sets with the reduced χ(2) test requires the estimation of experimental errors, which, if incorrect, may render statistical comparisons invalid. We report a ...Assessing similarity between data sets with the reduced χ(2) test requires the estimation of experimental errors, which, if incorrect, may render statistical comparisons invalid. We report a goodness-of-fit test, Correlation Map (CorMap), for assessing differences between one-dimensional spectra independently of explicit error estimates, using only data point correlations. Using small-angle X-ray scattering data, we demonstrate that CorMap maintains the power of the reduced χ(2) test; moreover, CorMap is also applicable to other physical experiments. |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDA96 |
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-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data |
-External links
Related items in Molecule of the Month |
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-Models
Model #167 | Type: dummy / Radius of dummy atoms: 1.90 A / Chi-square value: 0.958441 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #168 | Type: atomic / Chi-square value: 0.9604 Search similar-shape structures of this assembly by Omokage search (details) |
Model #169 | Type: atomic / Chi-square value: 0.976144 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Lysozyme / Ext coefficient: 2.653 / Specimen concentration: 2.61 mg/ml |
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Buffer | Name: 20 mM Sodium Acetate/HEPES / Concentration: 20.00 mM / pH: 6.8 / Comment: Mixed Buffer |
Entity #119 | Name: Lysozyme, lys / Type: protein / Description: Lysozyme C / Formula weight: 14.31 / Num. of mol.: 1 / Source: Gallus gallus / References: UniProt: P00698 Sequence: KVFGRCELAA AMKRHGLDNY RGYSLGNWVC AAKFESNFNT QATNRNTDGS TDYGILQINS RWWCNDGRTP GSRNLCNIPC SALLSSDITA SVNCAKKIVS DGNGMNAWVA WRNRCKGTDV QAWIRGCRL |
-Experimental information
Beam | Instrument name: PETRA III P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.12 Å / Dist. spec. to detc.: 3.1 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 2M | ||||||||||||||||||||||||||||||
Scan | Title: lysozyme pH 6.8 / Measurement date: Feb 17, 2013 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 0.05 sec. / Number of frames: 20 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 4.6 / Number of points: 456 /
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Result | Type of curve: single_conc / Standard: Bovine Serum Albumin
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