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- ChemComp-RUU: alpha-L-ribulofuranose -

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Basic information

EntryDatabase: PDB chemical components / ID: RUU
NameName: alpha-L-ribulofuranose / Synonyms: alpha-L-ribulose; L-ribulose; ribulose

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Chemical information

Composition
Formula: C5H10O5 / Number of atoms: 20 / Formula weight: 150.13 / Formal charge: 0
Others

4ns7
PDB Unreleased entry

Type: L-saccharide, alpha linking / PDB classification: ATOMS / Three letter code: RUU / Ideal coordinates details: Corina / Model coordinates PDB-ID: 4NS7
History
Create componentDec 5, 2013
Initial releaseMay 28, 2014
Other modificationAug 12, 2019
Other modificationDec 19, 2019
Other modificationJul 3, 2020
Modify synonymsJul 17, 2020
Modify atom idJul 17, 2020
Modify component atom idJul 17, 2020
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 12.01OCC1(O)OCC(O)C1O
CACTVS 3.385OC[C]1(O)OC[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C1C(C(C(O1)(CO)O)O)O

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SMILES CANONICAL

CACTVS 3.385OC[C@@]1(O)OC[C@H](O)[C@@H]1O
OpenEye OEToolkits 1.7.6C1[C@@H]([C@@H]([C@](O1)(CO)O)O)O

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InChI

InChI 1.03InChI=1S/C5H10O5/c6-2-5(9)4(8)3(7)1-10-5/h3-4,6-9H,1-2H2/t3-,4-,5+/m0/s1

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InChIKey

InChI 1.03LQXVFWRQNMEDEE-VAYJURFESA-N

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SYSTEMATIC NAME

ACDLabs 12.01alpha-L-ribulofuranose
OpenEye OEToolkits 1.7.6(2R,3S,4S)-2-(hydroxymethyl)oxolane-2,3,4-triol

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CONDENSED IUPAC CARBOHYDRATE SYMBOL

GMML 1.0LRulfa

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COMMON NAME

GMML 1.0a-L-ribulofuranose

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IUPAC CARBOHYDRATE SYMBOL

PDB-CARE 1.0a-L-Rulf

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PDB entries

Showing all 4 items

PDB-4q0q:
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribulose

PDB-4q0v:
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex with L-ribulose

PDB-4qe1:
Room temperature X-ray structure of D-xylose isomerase in complex with two Cd2+ ions and L-ribulose

PDB-4qe5:
Room temperature X-ray structure of D-xylose isomerase in complex with two Mg2+ ions and L-ribulose

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