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- PDB-9v7h: Phycobilisome rod R2 from Gloeobacter violaceus PCC 7421 -

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ID or keywords:

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Basic information

Entry
Database: PDB / ID: 9v7h
TitlePhycobilisome rod R2 from Gloeobacter violaceus PCC 7421
Components
  • (Phycocyanin-associated rod linker ...) x 2
  • Glr1262 protein
  • Phycocyanin alpha chain
  • Phycocyanin beta chain
KeywordsPHOTOSYNTHESIS / Phycobilisome
Function / homology
Function and homology information


phycobilisome / plasma membrane-derived thylakoid membrane / photosynthesis
Similarity search - Function
Phycobilisome linker domain / Phycobilisome linker domain superfamily / Phycobilisome Linker polypeptide / Phycobilisome (PBS) linker domain profile. / Phycobilisome, alpha/beta subunit / Phycobilisome, alpha/beta subunit superfamily / Phycobilisome protein / Globin-like superfamily
Similarity search - Domain/homology
PHYCOCYANOBILIN / Phycocyanin beta chain / Phycocyanin alpha chain / Glr1262 protein
Similarity search - Component
Biological speciesGloeobacter violaceus PCC 7421 (bacteria)
MethodELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 2.95 Å
AuthorsBurtseva, A.D. / Baymukhametov, T.N. / Slonimskiy, Y.B. / Popov, V.O. / Sluchanko, N.N. / Boyko, K.M.
Funding support Russian Federation, 1items
OrganizationGrant numberCountry
Russian Science Foundation23-74-00062 Russian Federation
CitationJournal: To Be Published
Title: Structure and quenching of a bundle-shaped phycobilisome
Authors: Burtseva, A.D. / Slonimskiy, Y.B. / Baymukhametov, T.N. / Sinetova, M.A. / Maksimov, E.G. / Popov, V.O. / Boyko, K.M. / Sluchanko, N.N.
History
DepositionMay 28, 2025Deposition site: PDBJ / Processing site: PDBJ
Revision 1.0Sep 24, 2025Provider: repository / Type: Initial release
Revision 1.0Sep 24, 2025Data content type: EM metadata / Data content type: EM metadata / Provider: repository / Type: Initial release
Revision 1.0Sep 24, 2025Data content type: Half map / Part number: 1 / Data content type: Half map / Provider: repository / Type: Initial release
Revision 1.0Sep 24, 2025Data content type: Half map / Part number: 2 / Data content type: Half map / Provider: repository / Type: Initial release
Revision 1.0Sep 24, 2025Data content type: Image / Data content type: Image / Provider: repository / Type: Initial release
Revision 1.0Sep 24, 2025Data content type: Primary map / Data content type: Primary map / Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Phycocyanin-associated rod linker protein
B: Phycocyanin beta chain
C: Phycocyanin alpha chain
D: Phycocyanin beta chain
E: Phycocyanin alpha chain
F: Phycocyanin beta chain
G: Phycocyanin alpha chain
H: Phycocyanin beta chain
I: Phycocyanin alpha chain
J: Phycocyanin beta chain
K: Phycocyanin alpha chain
L: Phycocyanin beta chain
M: Phycocyanin-associated rod linker protein
N: Phycocyanin alpha chain
O: Phycocyanin beta chain
P: Phycocyanin alpha chain
Q: Phycocyanin beta chain
R: Phycocyanin alpha chain
S: Phycocyanin beta chain
T: Phycocyanin alpha chain
U: Phycocyanin beta chain
V: Phycocyanin alpha chain
W: Phycocyanin beta chain
X: Phycocyanin alpha chain
Y: Phycocyanin beta chain
Z: Glr1262 protein
a: Phycocyanin alpha chain
hetero molecules


Theoretical massNumber of molelcules
Total (without water)609,22563
Polymers588,03227
Non-polymers21,19336
Water00
1


  • Idetical with deposited unit
  • defined by author
  • Evidence: electron microscopy, not applicable
TypeNameSymmetry operationNumber
identity operation1_5551
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21A
32A
42A
53A
63A
74A
84A
95A
105A
116A
126A
137A
147A
158A
168A
179A
189A
1910A
2010A
2111A
2211A
2312A
2412A
2513A
2613A
2714A
2814A
2915A
3015A
3116A
3216A
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4121A
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6131A
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7136A
7236A
7337A
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7538A
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8040A
8141A
8241A
8342A
8442A
8543A
8643A
8744A
8844A
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9045A
9146A
9246A
9347A
9447A
9548A
9648A
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9849A
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10251A
10352A
10452A
10553A
10653A
10754A
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11055A
11156A
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11457A
11558A
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12161A
12261A
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13166A
13266A
13367A
13467A
13568A
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14171A
14271A
14372A
14472A
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19296A
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248124A
249125A
250125A
251126A
252126A
253127A
254127A
255128A
256128A
257129A
258129A
259130A
260130A
261131A
262131A
263132A
264132A

NCS ensembles :
IDDetails
1Local NCS retraints between domains: 1 2
2Local NCS retraints between domains: 3 4
3Local NCS retraints between domains: 5 6
4Local NCS retraints between domains: 7 8
5Local NCS retraints between domains: 9 10
6Local NCS retraints between domains: 11 12
7Local NCS retraints between domains: 13 14
8Local NCS retraints between domains: 15 16
9Local NCS retraints between domains: 17 18
10Local NCS retraints between domains: 19 20
11Local NCS retraints between domains: 21 22
12Local NCS retraints between domains: 23 24
13Local NCS retraints between domains: 25 26
14Local NCS retraints between domains: 27 28
15Local NCS retraints between domains: 29 30
16Local NCS retraints between domains: 31 32
17Local NCS retraints between domains: 33 34
18Local NCS retraints between domains: 35 36
19Local NCS retraints between domains: 37 38
20Local NCS retraints between domains: 39 40
21Local NCS retraints between domains: 41 42
22Local NCS retraints between domains: 43 44
23Local NCS retraints between domains: 45 46
24Local NCS retraints between domains: 47 48
25Local NCS retraints between domains: 49 50
26Local NCS retraints between domains: 51 52
27Local NCS retraints between domains: 53 54
28Local NCS retraints between domains: 55 56
29Local NCS retraints between domains: 57 58
30Local NCS retraints between domains: 59 60
31Local NCS retraints between domains: 61 62
32Local NCS retraints between domains: 63 64
33Local NCS retraints between domains: 65 66
34Local NCS retraints between domains: 67 68
35Local NCS retraints between domains: 69 70
36Local NCS retraints between domains: 71 72
37Local NCS retraints between domains: 73 74
38Local NCS retraints between domains: 75 76
39Local NCS retraints between domains: 77 78
40Local NCS retraints between domains: 79 80
41Local NCS retraints between domains: 81 82
42Local NCS retraints between domains: 83 84
43Local NCS retraints between domains: 85 86
44Local NCS retraints between domains: 87 88
45Local NCS retraints between domains: 89 90
46Local NCS retraints between domains: 91 92
47Local NCS retraints between domains: 93 94
48Local NCS retraints between domains: 95 96
49Local NCS retraints between domains: 97 98
50Local NCS retraints between domains: 99 100
51Local NCS retraints between domains: 101 102
52Local NCS retraints between domains: 103 104
53Local NCS retraints between domains: 105 106
54Local NCS retraints between domains: 107 108
55Local NCS retraints between domains: 109 110
56Local NCS retraints between domains: 111 112
57Local NCS retraints between domains: 113 114
58Local NCS retraints between domains: 115 116
59Local NCS retraints between domains: 117 118
60Local NCS retraints between domains: 119 120
61Local NCS retraints between domains: 121 122
62Local NCS retraints between domains: 123 124
63Local NCS retraints between domains: 125 126
64Local NCS retraints between domains: 127 128
65Local NCS retraints between domains: 129 130
66Local NCS retraints between domains: 131 132
67Local NCS retraints between domains: 133 134
68Local NCS retraints between domains: 135 136
69Local NCS retraints between domains: 137 138
70Local NCS retraints between domains: 139 140
71Local NCS retraints between domains: 141 142
72Local NCS retraints between domains: 143 144
73Local NCS retraints between domains: 145 146
74Local NCS retraints between domains: 147 148
75Local NCS retraints between domains: 149 150
76Local NCS retraints between domains: 151 152
77Local NCS retraints between domains: 153 154
78Local NCS retraints between domains: 155 156
79Local NCS retraints between domains: 157 158
80Local NCS retraints between domains: 159 160
81Local NCS retraints between domains: 161 162
82Local NCS retraints between domains: 163 164
83Local NCS retraints between domains: 165 166
84Local NCS retraints between domains: 167 168
85Local NCS retraints between domains: 169 170
86Local NCS retraints between domains: 171 172
87Local NCS retraints between domains: 173 174
88Local NCS retraints between domains: 175 176
89Local NCS retraints between domains: 177 178
90Local NCS retraints between domains: 179 180
91Local NCS retraints between domains: 181 182
92Local NCS retraints between domains: 183 184
93Local NCS retraints between domains: 185 186
94Local NCS retraints between domains: 187 188
95Local NCS retraints between domains: 189 190
96Local NCS retraints between domains: 191 192
97Local NCS retraints between domains: 193 194
98Local NCS retraints between domains: 195 196
99Local NCS retraints between domains: 197 198
100Local NCS retraints between domains: 199 200
101Local NCS retraints between domains: 201 202
102Local NCS retraints between domains: 203 204
103Local NCS retraints between domains: 205 206
104Local NCS retraints between domains: 207 208
105Local NCS retraints between domains: 209 210
106Local NCS retraints between domains: 211 212
107Local NCS retraints between domains: 213 214
108Local NCS retraints between domains: 215 216
109Local NCS retraints between domains: 217 218
110Local NCS retraints between domains: 219 220
111Local NCS retraints between domains: 221 222
112Local NCS retraints between domains: 223 224
113Local NCS retraints between domains: 225 226
114Local NCS retraints between domains: 227 228
115Local NCS retraints between domains: 229 230
116Local NCS retraints between domains: 231 232
117Local NCS retraints between domains: 233 234
118Local NCS retraints between domains: 235 236
119Local NCS retraints between domains: 237 238
120Local NCS retraints between domains: 239 240
121Local NCS retraints between domains: 241 242
122Local NCS retraints between domains: 243 244
123Local NCS retraints between domains: 245 246
124Local NCS retraints between domains: 247 248
125Local NCS retraints between domains: 249 250
126Local NCS retraints between domains: 251 252
127Local NCS retraints between domains: 253 254
128Local NCS retraints between domains: 255 256
129Local NCS retraints between domains: 257 258
130Local NCS retraints between domains: 259 260
131Local NCS retraints between domains: 261 262
132Local NCS retraints between domains: 263 264

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Components

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Phycocyanin-associated rod linker ... , 2 types, 2 molecules AM

#1: Protein Phycocyanin-associated rod linker protein


Mass: 31085.066 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Gloeobacter violaceus PCC 7421 (bacteria)
#4: Protein Phycocyanin-associated rod linker protein


Mass: 30913.822 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Gloeobacter violaceus PCC 7421 (bacteria)

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Protein , 3 types, 25 molecules BDFHJLOQSUWYCEGIKNPRTVXaZ

#2: Protein
Phycocyanin beta chain


Mass: 18478.953 Da / Num. of mol.: 12 / Source method: isolated from a natural source / Source: (natural) Gloeobacter violaceus PCC 7421 (bacteria) / References: UniProt: Q7M7C7
#3: Protein
Phycocyanin alpha chain


Mass: 17679.852 Da / Num. of mol.: 12 / Source method: isolated from a natural source / Source: (natural) Gloeobacter violaceus PCC 7421 (bacteria) / References: UniProt: Q7M7F7
#5: Protein Glr1262 protein


Mass: 92127.602 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Gloeobacter violaceus PCC 7421 (bacteria) / References: UniProt: Q7NL64

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Non-polymers , 1 types, 36 molecules

#6: Chemical...
ChemComp-CYC / PHYCOCYANOBILIN


Mass: 588.694 Da / Num. of mol.: 36 / Source method: obtained synthetically / Formula: C33H40N4O6 / Feature type: SUBJECT OF INVESTIGATION

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Details

Has ligand of interestY
Has protein modificationY

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Experimental details

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Experiment

ExperimentMethod: ELECTRON MICROSCOPY
EM experimentAggregation state: PARTICLE / 3D reconstruction method: single particle reconstruction

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Sample preparation

ComponentName: Bundle-shaped phycobilisome / Type: COMPLEX / Entity ID: #1-#5 / Source: NATURAL
Source (natural)Organism: Gloeobacter violaceus PCC 7421 (bacteria)
Buffer solutionpH: 7
Buffer componentConc.: 50 mM / Name: Tris(hydroxymethyl)aminomethane hydrochloride / Formula: Tris-HCl
SpecimenEmbedding applied: NO / Shadowing applied: NO / Staining applied: NO / Vitrification applied: YES
VitrificationCryogen name: ETHANE

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Electron microscopy imaging

Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company
MicroscopyModel: TFS KRIOS / Details: Preliminary grid screening was performed manually.
Electron gunElectron source: FIELD EMISSION GUN / Accelerating voltage: 300 kV / Illumination mode: FLOOD BEAM
Electron lensMode: BRIGHT FIELD / Nominal magnification: 85000 X / Nominal defocus max: 1600 nm / Nominal defocus min: 600 nm / Cs: 0.01 mm / C2 aperture diameter: 100 µm / Alignment procedure: ZEMLIN TABLEAU
Specimen holderCryogen: NITROGEN / Specimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER
Image recordingAverage exposure time: 3.9 sec. / Electron dose: 66 e/Å2 / Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k)
EM imaging opticsEnergyfilter name: GIF Bioquantum / Energyfilter slit width: 20 eV
Spherical aberration corrector: Microscope was modified with a Cs corrector (CEOS GmbH, Germany).
Image scansWidth: 5760 / Height: 4092

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Processing

EM software
IDNameVersionCategory
2SerialEM4.04image acquisition
4Warp1.0.9CTF correction
11cryoSPARC4.7final Euler assignment
13cryoSPARC4.73D reconstruction
CTF correctionType: NONE
SymmetryPoint symmetry: C1 (asymmetric)
3D reconstructionResolution: 2.95 Å / Resolution method: FSC 0.143 CUT-OFF / Num. of particles: 207644 / Symmetry type: POINT
RefinementResolution: 2.95→2.95 Å / Cor.coef. Fo:Fc: 0.948 / WRfactor Rwork: 0.306 / SU B: 29.793 / SU ML: 0.499 / Average fsc free: 0 / Average fsc overall: 0.8174 / Average fsc work: 0.8174 / ESU R: 0.69
Details: Hydrogens have been added in their riding positions
RfactorNum. reflection% reflection
Rwork0.3064 217183 -
all0.306 --
Rfree--0 %
obs--100 %
Solvent computationSolvent model: NONE
Displacement parametersBiso mean: 45.623 Å2
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
ELECTRON MICROSCOPYr_bond_refined_d0.0080.01237150
ELECTRON MICROSCOPYr_bond_other_d0.0010.01635230
ELECTRON MICROSCOPYr_angle_refined_deg1.7371.81450558
ELECTRON MICROSCOPYr_angle_other_deg0.6661.74880604
ELECTRON MICROSCOPYr_dihedral_angle_1_deg6.14854548
ELECTRON MICROSCOPYr_dihedral_angle_2_deg15.6988.529918
ELECTRON MICROSCOPYr_dihedral_angle_3_deg16.86105925
ELECTRON MICROSCOPYr_dihedral_angle_6_deg13.903101608
ELECTRON MICROSCOPYr_chiral_restr0.070.25605
ELECTRON MICROSCOPYr_gen_planes_refined0.0070.0245952
ELECTRON MICROSCOPYr_gen_planes_other0.0040.028594
ELECTRON MICROSCOPYr_nbd_refined0.3180.211785
ELECTRON MICROSCOPYr_symmetry_nbd_other0.2230.234891
ELECTRON MICROSCOPYr_nbtor_refined0.2080.220133
ELECTRON MICROSCOPYr_symmetry_nbtor_other0.0840.221017
ELECTRON MICROSCOPYr_xyhbond_nbd_refined0.1780.21214
ELECTRON MICROSCOPYr_symmetry_xyhbond_nbd_other0.1520.238
ELECTRON MICROSCOPYr_mcbond_it1.5164.54918273
ELECTRON MICROSCOPYr_mcbond_other1.5164.54918273
ELECTRON MICROSCOPYr_mcangle_it2.5148.15622794
ELECTRON MICROSCOPYr_mcangle_other2.5148.15622795
ELECTRON MICROSCOPYr_scbond_it1.544.64918877
ELECTRON MICROSCOPYr_scbond_other1.544.64818876
ELECTRON MICROSCOPYr_scangle_it2.7588.46827764
ELECTRON MICROSCOPYr_scangle_other2.7588.46827765
ELECTRON MICROSCOPYr_lrange_it4.47641.2547235
ELECTRON MICROSCOPYr_lrange_other4.47641.2547236
ELECTRON MICROSCOPYr_ncsr_local_group_10.0960.055350
ELECTRON MICROSCOPYr_ncsr_local_group_20.0820.055353
ELECTRON MICROSCOPYr_ncsr_local_group_30.0730.055441
ELECTRON MICROSCOPYr_ncsr_local_group_40.0820.055385
ELECTRON MICROSCOPYr_ncsr_local_group_50.1040.055312
ELECTRON MICROSCOPYr_ncsr_local_group_60.0450.055515
ELECTRON MICROSCOPYr_ncsr_local_group_70.0860.055381
ELECTRON MICROSCOPYr_ncsr_local_group_80.080.055378
ELECTRON MICROSCOPYr_ncsr_local_group_90.0730.055437
ELECTRON MICROSCOPYr_ncsr_local_group_100.0830.055390
ELECTRON MICROSCOPYr_ncsr_local_group_110.0990.055304
ELECTRON MICROSCOPYr_ncsr_local_group_120.0570.055328
ELECTRON MICROSCOPYr_ncsr_local_group_130.0580.055354
ELECTRON MICROSCOPYr_ncsr_local_group_140.0750.055330
ELECTRON MICROSCOPYr_ncsr_local_group_150.0520.055336
ELECTRON MICROSCOPYr_ncsr_local_group_160.0880.055300
ELECTRON MICROSCOPYr_ncsr_local_group_170.0060.055435
ELECTRON MICROSCOPYr_ncsr_local_group_180.0580.055327
ELECTRON MICROSCOPYr_ncsr_local_group_190.0580.055355
ELECTRON MICROSCOPYr_ncsr_local_group_200.0740.055331
ELECTRON MICROSCOPYr_ncsr_local_group_210.0520.055333
ELECTRON MICROSCOPYr_ncsr_local_group_220.0880.055294
ELECTRON MICROSCOPYr_ncsr_local_group_230.0920.055316
ELECTRON MICROSCOPYr_ncsr_local_group_240.090.055397
ELECTRON MICROSCOPYr_ncsr_local_group_250.0950.055350
ELECTRON MICROSCOPYr_ncsr_local_group_260.1030.055368
ELECTRON MICROSCOPYr_ncsr_local_group_270.1020.055335
ELECTRON MICROSCOPYr_ncsr_local_group_280.0530.055560
ELECTRON MICROSCOPYr_ncsr_local_group_290.0920.055343
ELECTRON MICROSCOPYr_ncsr_local_group_300.090.055399
ELECTRON MICROSCOPYr_ncsr_local_group_310.0960.055358
ELECTRON MICROSCOPYr_ncsr_local_group_320.0970.055373
ELECTRON MICROSCOPYr_ncsr_local_group_330.0540.055349
ELECTRON MICROSCOPYr_ncsr_local_group_340.070.055310
ELECTRON MICROSCOPYr_ncsr_local_group_350.0460.055363
ELECTRON MICROSCOPYr_ncsr_local_group_360.0830.055291
ELECTRON MICROSCOPYr_ncsr_local_group_370.0580.055317
ELECTRON MICROSCOPYr_ncsr_local_group_380.0050.055427
ELECTRON MICROSCOPYr_ncsr_local_group_390.0550.055352
ELECTRON MICROSCOPYr_ncsr_local_group_400.070.055311
ELECTRON MICROSCOPYr_ncsr_local_group_410.0470.055358
ELECTRON MICROSCOPYr_ncsr_local_group_420.0840.055287
ELECTRON MICROSCOPYr_ncsr_local_group_430.0730.055399
ELECTRON MICROSCOPYr_ncsr_local_group_440.0690.055392
ELECTRON MICROSCOPYr_ncsr_local_group_450.10.055305
ELECTRON MICROSCOPYr_ncsr_local_group_460.0870.055351
ELECTRON MICROSCOPYr_ncsr_local_group_470.0820.055339
ELECTRON MICROSCOPYr_ncsr_local_group_480.0110.055534
ELECTRON MICROSCOPYr_ncsr_local_group_490.0730.055404
ELECTRON MICROSCOPYr_ncsr_local_group_500.070.055391
ELECTRON MICROSCOPYr_ncsr_local_group_510.0940.055308
ELECTRON MICROSCOPYr_ncsr_local_group_520.0770.055319
ELECTRON MICROSCOPYr_ncsr_local_group_530.0470.055365
ELECTRON MICROSCOPYr_ncsr_local_group_540.0840.055306
ELECTRON MICROSCOPYr_ncsr_local_group_550.0590.055346
ELECTRON MICROSCOPYr_ncsr_local_group_560.0550.055349
ELECTRON MICROSCOPYr_ncsr_local_group_570.0060.055436
ELECTRON MICROSCOPYr_ncsr_local_group_580.0770.055320
ELECTRON MICROSCOPYr_ncsr_local_group_590.0480.055357
ELECTRON MICROSCOPYr_ncsr_local_group_600.0840.055303
ELECTRON MICROSCOPYr_ncsr_local_group_610.0760.055426
ELECTRON MICROSCOPYr_ncsr_local_group_620.1020.055354
ELECTRON MICROSCOPYr_ncsr_local_group_630.0790.055406
ELECTRON MICROSCOPYr_ncsr_local_group_640.0830.055429
ELECTRON MICROSCOPYr_ncsr_local_group_650.0730.055424
ELECTRON MICROSCOPYr_ncsr_local_group_660.0060.055602
ELECTRON MICROSCOPYr_ncsr_local_group_670.0770.055433
ELECTRON MICROSCOPYr_ncsr_local_group_680.0970.055361
ELECTRON MICROSCOPYr_ncsr_local_group_690.0730.055322
ELECTRON MICROSCOPYr_ncsr_local_group_700.0890.055301
ELECTRON MICROSCOPYr_ncsr_local_group_710.0750.055329
ELECTRON MICROSCOPYr_ncsr_local_group_720.0720.055311
ELECTRON MICROSCOPYr_ncsr_local_group_730.0770.055316
ELECTRON MICROSCOPYr_ncsr_local_group_740.0070.055455
ELECTRON MICROSCOPYr_ncsr_local_group_750.0740.055314
ELECTRON MICROSCOPYr_ncsr_local_group_760.0890.055297
ELECTRON MICROSCOPYr_ncsr_local_group_770.1010.055356
ELECTRON MICROSCOPYr_ncsr_local_group_780.0870.055348
ELECTRON MICROSCOPYr_ncsr_local_group_790.0880.055384
ELECTRON MICROSCOPYr_ncsr_local_group_800.0680.055415
ELECTRON MICROSCOPYr_ncsr_local_group_810.0770.055426
ELECTRON MICROSCOPYr_ncsr_local_group_820.0060.055593
ELECTRON MICROSCOPYr_ncsr_local_group_830.0930.055354
ELECTRON MICROSCOPYr_ncsr_local_group_840.0830.055300
ELECTRON MICROSCOPYr_ncsr_local_group_850.0530.055338
ELECTRON MICROSCOPYr_ncsr_local_group_860.0470.055361
ELECTRON MICROSCOPYr_ncsr_local_group_870.0470.055365
ELECTRON MICROSCOPYr_ncsr_local_group_880.0730.055322
ELECTRON MICROSCOPYr_ncsr_local_group_890.0060.055429
ELECTRON MICROSCOPYr_ncsr_local_group_900.0830.055298
ELECTRON MICROSCOPYr_ncsr_local_group_910.1050.055307
ELECTRON MICROSCOPYr_ncsr_local_group_920.0940.055381
ELECTRON MICROSCOPYr_ncsr_local_group_930.1010.055329
ELECTRON MICROSCOPYr_ncsr_local_group_940.1020.055355
ELECTRON MICROSCOPYr_ncsr_local_group_950.1010.055358
ELECTRON MICROSCOPYr_ncsr_local_group_960.0580.055493
ELECTRON MICROSCOPYr_ncsr_local_group_970.0870.055306
ELECTRON MICROSCOPYr_ncsr_local_group_980.0840.055292
ELECTRON MICROSCOPYr_ncsr_local_group_990.0830.055309
ELECTRON MICROSCOPYr_ncsr_local_group_1000.0880.055307
ELECTRON MICROSCOPYr_ncsr_local_group_1010.0830.055298
ELECTRON MICROSCOPYr_ncsr_local_group_1020.0070.055463
ELECTRON MICROSCOPYr_ncsr_local_group_1030.0930.055361
ELECTRON MICROSCOPYr_ncsr_local_group_1040.0860.055380
ELECTRON MICROSCOPYr_ncsr_local_group_1050.0790.055408
ELECTRON MICROSCOPYr_ncsr_local_group_1060.0880.055361
ELECTRON MICROSCOPYr_ncsr_local_group_1070.1040.055283
ELECTRON MICROSCOPYr_ncsr_local_group_1080.0580.055320
ELECTRON MICROSCOPYr_ncsr_local_group_1090.0590.055353
ELECTRON MICROSCOPYr_ncsr_local_group_1100.0740.055339
ELECTRON MICROSCOPYr_ncsr_local_group_1110.0530.055337
ELECTRON MICROSCOPYr_ncsr_local_group_1120.0870.055295
ELECTRON MICROSCOPYr_ncsr_local_group_1130.0820.055369
ELECTRON MICROSCOPYr_ncsr_local_group_1140.0830.055433
ELECTRON MICROSCOPYr_ncsr_local_group_1150.0890.055396
ELECTRON MICROSCOPYr_ncsr_local_group_1160.0860.055402
ELECTRON MICROSCOPYr_ncsr_local_group_1170.0560.055354
ELECTRON MICROSCOPYr_ncsr_local_group_1180.0710.055316
ELECTRON MICROSCOPYr_ncsr_local_group_1190.0470.055360
ELECTRON MICROSCOPYr_ncsr_local_group_1200.0830.055285
ELECTRON MICROSCOPYr_ncsr_local_group_1210.0730.055433
ELECTRON MICROSCOPYr_ncsr_local_group_1220.0680.055421
ELECTRON MICROSCOPYr_ncsr_local_group_1230.0930.055320
ELECTRON MICROSCOPYr_ncsr_local_group_1240.0770.055325
ELECTRON MICROSCOPYr_ncsr_local_group_1250.0470.055363
ELECTRON MICROSCOPYr_ncsr_local_group_1260.0830.055304
ELECTRON MICROSCOPYr_ncsr_local_group_1270.0770.055434
ELECTRON MICROSCOPYr_ncsr_local_group_1280.0950.055359
ELECTRON MICROSCOPYr_ncsr_local_group_1290.0730.055322
ELECTRON MICROSCOPYr_ncsr_local_group_1300.0880.055298
ELECTRON MICROSCOPYr_ncsr_local_group_1310.0940.055360
ELECTRON MICROSCOPYr_ncsr_local_group_1320.0830.055289
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDTypeRms dev position (Å)Weight position
11AELECTRON MICROSCOPYLocal ncs0.095890.05009
12AELECTRON MICROSCOPYLocal ncs0.095890.05009
23AELECTRON MICROSCOPYLocal ncs0.081970.05009
24AELECTRON MICROSCOPYLocal ncs0.081970.05009
35AELECTRON MICROSCOPYLocal ncs0.073430.05009
36AELECTRON MICROSCOPYLocal ncs0.073430.05009
47AELECTRON MICROSCOPYLocal ncs0.081860.05009
48AELECTRON MICROSCOPYLocal ncs0.081860.05009
59AELECTRON MICROSCOPYLocal ncs0.103930.05008
510AELECTRON MICROSCOPYLocal ncs0.103930.05008
611AELECTRON MICROSCOPYLocal ncs0.04530.0501
612AELECTRON MICROSCOPYLocal ncs0.04530.0501
713AELECTRON MICROSCOPYLocal ncs0.086180.05009
714AELECTRON MICROSCOPYLocal ncs0.086180.05009
815AELECTRON MICROSCOPYLocal ncs0.080420.05009
816AELECTRON MICROSCOPYLocal ncs0.080420.05009
917AELECTRON MICROSCOPYLocal ncs0.073160.05009
918AELECTRON MICROSCOPYLocal ncs0.073160.05009
1019AELECTRON MICROSCOPYLocal ncs0.083020.05009
1020AELECTRON MICROSCOPYLocal ncs0.083020.05009
1121AELECTRON MICROSCOPYLocal ncs0.098980.05008
1122AELECTRON MICROSCOPYLocal ncs0.098980.05008
1223AELECTRON MICROSCOPYLocal ncs0.057270.0501
1224AELECTRON MICROSCOPYLocal ncs0.057270.0501
1325AELECTRON MICROSCOPYLocal ncs0.058120.0501
1326AELECTRON MICROSCOPYLocal ncs0.058120.0501
1427AELECTRON MICROSCOPYLocal ncs0.07460.0501
1428AELECTRON MICROSCOPYLocal ncs0.07460.0501
1529AELECTRON MICROSCOPYLocal ncs0.05160.0501
1530AELECTRON MICROSCOPYLocal ncs0.05160.0501
1631AELECTRON MICROSCOPYLocal ncs0.08770.0501
1632AELECTRON MICROSCOPYLocal ncs0.08770.0501
1733AELECTRON MICROSCOPYLocal ncs0.005820.05011
1734AELECTRON MICROSCOPYLocal ncs0.005820.05011
1835AELECTRON MICROSCOPYLocal ncs0.05810.0501
1836AELECTRON MICROSCOPYLocal ncs0.05810.0501
1937AELECTRON MICROSCOPYLocal ncs0.057950.0501
1938AELECTRON MICROSCOPYLocal ncs0.057950.0501
2039AELECTRON MICROSCOPYLocal ncs0.074490.0501
2040AELECTRON MICROSCOPYLocal ncs0.074490.0501
2141AELECTRON MICROSCOPYLocal ncs0.05190.0501
2142AELECTRON MICROSCOPYLocal ncs0.05190.0501
2243AELECTRON MICROSCOPYLocal ncs0.087760.0501
2244AELECTRON MICROSCOPYLocal ncs0.087760.0501
2345AELECTRON MICROSCOPYLocal ncs0.092260.05008
2346AELECTRON MICROSCOPYLocal ncs0.092260.05008
2447AELECTRON MICROSCOPYLocal ncs0.09020.05009
2448AELECTRON MICROSCOPYLocal ncs0.09020.05009
2549AELECTRON MICROSCOPYLocal ncs0.094750.05009
2550AELECTRON MICROSCOPYLocal ncs0.094750.05009
2651AELECTRON MICROSCOPYLocal ncs0.103370.05009
2652AELECTRON MICROSCOPYLocal ncs0.103370.05009
2753AELECTRON MICROSCOPYLocal ncs0.102240.05008
2754AELECTRON MICROSCOPYLocal ncs0.102240.05008
2855AELECTRON MICROSCOPYLocal ncs0.053080.0501
2856AELECTRON MICROSCOPYLocal ncs0.053080.0501
2957AELECTRON MICROSCOPYLocal ncs0.091540.05009
2958AELECTRON MICROSCOPYLocal ncs0.091540.05009
3059AELECTRON MICROSCOPYLocal ncs0.089910.05009
3060AELECTRON MICROSCOPYLocal ncs0.089910.05009
3161AELECTRON MICROSCOPYLocal ncs0.095510.05009
3162AELECTRON MICROSCOPYLocal ncs0.095510.05009
3263AELECTRON MICROSCOPYLocal ncs0.096620.05009
3264AELECTRON MICROSCOPYLocal ncs0.096620.05009
3365AELECTRON MICROSCOPYLocal ncs0.054210.05011
3366AELECTRON MICROSCOPYLocal ncs0.054210.05011
3467AELECTRON MICROSCOPYLocal ncs0.07050.0501
3468AELECTRON MICROSCOPYLocal ncs0.07050.0501
3569AELECTRON MICROSCOPYLocal ncs0.046340.0501
3570AELECTRON MICROSCOPYLocal ncs0.046340.0501
3671AELECTRON MICROSCOPYLocal ncs0.083140.0501
3672AELECTRON MICROSCOPYLocal ncs0.083140.0501
3773AELECTRON MICROSCOPYLocal ncs0.057730.0501
3774AELECTRON MICROSCOPYLocal ncs0.057730.0501
3875AELECTRON MICROSCOPYLocal ncs0.00510.05011
3876AELECTRON MICROSCOPYLocal ncs0.00510.05011
3977AELECTRON MICROSCOPYLocal ncs0.054660.0501
3978AELECTRON MICROSCOPYLocal ncs0.054660.0501
4079AELECTRON MICROSCOPYLocal ncs0.069950.0501
4080AELECTRON MICROSCOPYLocal ncs0.069950.0501
4181AELECTRON MICROSCOPYLocal ncs0.046630.0501
4182AELECTRON MICROSCOPYLocal ncs0.046630.0501
4283AELECTRON MICROSCOPYLocal ncs0.084080.0501
4284AELECTRON MICROSCOPYLocal ncs0.084080.0501
4385AELECTRON MICROSCOPYLocal ncs0.072750.05009
4386AELECTRON MICROSCOPYLocal ncs0.072750.05009
4487AELECTRON MICROSCOPYLocal ncs0.06950.05009
4488AELECTRON MICROSCOPYLocal ncs0.06950.05009
4589AELECTRON MICROSCOPYLocal ncs0.100220.05008
4590AELECTRON MICROSCOPYLocal ncs0.100220.05008
4691AELECTRON MICROSCOPYLocal ncs0.086870.05009
4692AELECTRON MICROSCOPYLocal ncs0.086870.05009
4793AELECTRON MICROSCOPYLocal ncs0.082230.05009
4794AELECTRON MICROSCOPYLocal ncs0.082230.05009
4895AELECTRON MICROSCOPYLocal ncs0.011420.0501
4896AELECTRON MICROSCOPYLocal ncs0.011420.0501
4997AELECTRON MICROSCOPYLocal ncs0.072510.05009
4998AELECTRON MICROSCOPYLocal ncs0.072510.05009
5099AELECTRON MICROSCOPYLocal ncs0.069520.05009
50100AELECTRON MICROSCOPYLocal ncs0.069520.05009
51101AELECTRON MICROSCOPYLocal ncs0.093610.05008
51102AELECTRON MICROSCOPYLocal ncs0.093610.05008
52103AELECTRON MICROSCOPYLocal ncs0.077210.0501
52104AELECTRON MICROSCOPYLocal ncs0.077210.0501
53105AELECTRON MICROSCOPYLocal ncs0.047150.0501
53106AELECTRON MICROSCOPYLocal ncs0.047150.0501
54107AELECTRON MICROSCOPYLocal ncs0.084230.0501
54108AELECTRON MICROSCOPYLocal ncs0.084230.0501
55109AELECTRON MICROSCOPYLocal ncs0.059430.0501
55110AELECTRON MICROSCOPYLocal ncs0.059430.0501
56111AELECTRON MICROSCOPYLocal ncs0.055470.0501
56112AELECTRON MICROSCOPYLocal ncs0.055470.0501
57113AELECTRON MICROSCOPYLocal ncs0.005760.05011
57114AELECTRON MICROSCOPYLocal ncs0.005760.05011
58115AELECTRON MICROSCOPYLocal ncs0.077050.0501
58116AELECTRON MICROSCOPYLocal ncs0.077050.0501
59117AELECTRON MICROSCOPYLocal ncs0.047650.0501
59118AELECTRON MICROSCOPYLocal ncs0.047650.0501
60119AELECTRON MICROSCOPYLocal ncs0.084210.0501
60120AELECTRON MICROSCOPYLocal ncs0.084210.0501
61121AELECTRON MICROSCOPYLocal ncs0.075610.05009
61122AELECTRON MICROSCOPYLocal ncs0.075610.05009
62123AELECTRON MICROSCOPYLocal ncs0.102240.05009
62124AELECTRON MICROSCOPYLocal ncs0.102240.05009
63125AELECTRON MICROSCOPYLocal ncs0.07940.05009
63126AELECTRON MICROSCOPYLocal ncs0.07940.05009
64127AELECTRON MICROSCOPYLocal ncs0.083480.05009
64128AELECTRON MICROSCOPYLocal ncs0.083480.05009
65129AELECTRON MICROSCOPYLocal ncs0.07290.05009
65130AELECTRON MICROSCOPYLocal ncs0.07290.05009
66131AELECTRON MICROSCOPYLocal ncs0.00570.0501
66132AELECTRON MICROSCOPYLocal ncs0.00570.0501
67133AELECTRON MICROSCOPYLocal ncs0.077180.05009
67134AELECTRON MICROSCOPYLocal ncs0.077180.05009
68135AELECTRON MICROSCOPYLocal ncs0.097230.05009
68136AELECTRON MICROSCOPYLocal ncs0.097230.05009
69137AELECTRON MICROSCOPYLocal ncs0.073340.0501
69138AELECTRON MICROSCOPYLocal ncs0.073340.0501
70139AELECTRON MICROSCOPYLocal ncs0.089280.0501
70140AELECTRON MICROSCOPYLocal ncs0.089280.0501
71141AELECTRON MICROSCOPYLocal ncs0.074680.0501
71142AELECTRON MICROSCOPYLocal ncs0.074680.0501
72143AELECTRON MICROSCOPYLocal ncs0.071620.0501
72144AELECTRON MICROSCOPYLocal ncs0.071620.0501
73145AELECTRON MICROSCOPYLocal ncs0.077040.0501
73146AELECTRON MICROSCOPYLocal ncs0.077040.0501
74147AELECTRON MICROSCOPYLocal ncs0.00660.05011
74148AELECTRON MICROSCOPYLocal ncs0.00660.05011
75149AELECTRON MICROSCOPYLocal ncs0.073560.0501
75150AELECTRON MICROSCOPYLocal ncs0.073560.0501
76151AELECTRON MICROSCOPYLocal ncs0.089020.0501
76152AELECTRON MICROSCOPYLocal ncs0.089020.0501
77153AELECTRON MICROSCOPYLocal ncs0.100810.05009
77154AELECTRON MICROSCOPYLocal ncs0.100810.05009
78155AELECTRON MICROSCOPYLocal ncs0.087070.05009
78156AELECTRON MICROSCOPYLocal ncs0.087070.05009
79157AELECTRON MICROSCOPYLocal ncs0.08790.05009
79158AELECTRON MICROSCOPYLocal ncs0.08790.05009
80159AELECTRON MICROSCOPYLocal ncs0.068220.05009
80160AELECTRON MICROSCOPYLocal ncs0.068220.05009
81161AELECTRON MICROSCOPYLocal ncs0.076710.05009
81162AELECTRON MICROSCOPYLocal ncs0.076710.05009
82163AELECTRON MICROSCOPYLocal ncs0.006280.0501
82164AELECTRON MICROSCOPYLocal ncs0.006280.0501
83165AELECTRON MICROSCOPYLocal ncs0.092970.05009
83166AELECTRON MICROSCOPYLocal ncs0.092970.05009
84167AELECTRON MICROSCOPYLocal ncs0.083290.0501
84168AELECTRON MICROSCOPYLocal ncs0.083290.0501
85169AELECTRON MICROSCOPYLocal ncs0.052950.0501
85170AELECTRON MICROSCOPYLocal ncs0.052950.0501
86171AELECTRON MICROSCOPYLocal ncs0.046790.0501
86172AELECTRON MICROSCOPYLocal ncs0.046790.0501
87173AELECTRON MICROSCOPYLocal ncs0.047050.0501
87174AELECTRON MICROSCOPYLocal ncs0.047050.0501
88175AELECTRON MICROSCOPYLocal ncs0.072820.0501
88176AELECTRON MICROSCOPYLocal ncs0.072820.0501
89177AELECTRON MICROSCOPYLocal ncs0.006310.05011
89178AELECTRON MICROSCOPYLocal ncs0.006310.05011
90179AELECTRON MICROSCOPYLocal ncs0.082860.0501
90180AELECTRON MICROSCOPYLocal ncs0.082860.0501
91181AELECTRON MICROSCOPYLocal ncs0.104820.05008
91182AELECTRON MICROSCOPYLocal ncs0.104820.05008
92183AELECTRON MICROSCOPYLocal ncs0.094390.05009
92184AELECTRON MICROSCOPYLocal ncs0.094390.05009
93185AELECTRON MICROSCOPYLocal ncs0.100950.05009
93186AELECTRON MICROSCOPYLocal ncs0.100950.05009
94187AELECTRON MICROSCOPYLocal ncs0.10180.05009
94188AELECTRON MICROSCOPYLocal ncs0.10180.05009
95189AELECTRON MICROSCOPYLocal ncs0.101360.05009
95190AELECTRON MICROSCOPYLocal ncs0.101360.05009
96191AELECTRON MICROSCOPYLocal ncs0.05780.05009
96192AELECTRON MICROSCOPYLocal ncs0.05780.05009
97193AELECTRON MICROSCOPYLocal ncs0.087280.0501
97194AELECTRON MICROSCOPYLocal ncs0.087280.0501
98195AELECTRON MICROSCOPYLocal ncs0.083520.0501
98196AELECTRON MICROSCOPYLocal ncs0.083520.0501
99197AELECTRON MICROSCOPYLocal ncs0.083030.0501
99198AELECTRON MICROSCOPYLocal ncs0.083030.0501
100199AELECTRON MICROSCOPYLocal ncs0.088350.0501
100200AELECTRON MICROSCOPYLocal ncs0.088350.0501
101201AELECTRON MICROSCOPYLocal ncs0.083380.0501
101202AELECTRON MICROSCOPYLocal ncs0.083380.0501
102203AELECTRON MICROSCOPYLocal ncs0.007060.05011
102204AELECTRON MICROSCOPYLocal ncs0.007060.05011
103205AELECTRON MICROSCOPYLocal ncs0.093310.05009
103206AELECTRON MICROSCOPYLocal ncs0.093310.05009
104207AELECTRON MICROSCOPYLocal ncs0.086360.05009
104208AELECTRON MICROSCOPYLocal ncs0.086360.05009
105209AELECTRON MICROSCOPYLocal ncs0.079120.05009
105210AELECTRON MICROSCOPYLocal ncs0.079120.05009
106211AELECTRON MICROSCOPYLocal ncs0.087960.05009
106212AELECTRON MICROSCOPYLocal ncs0.087960.05009
107213AELECTRON MICROSCOPYLocal ncs0.10430.05008
107214AELECTRON MICROSCOPYLocal ncs0.10430.05008
108215AELECTRON MICROSCOPYLocal ncs0.058390.0501
108216AELECTRON MICROSCOPYLocal ncs0.058390.0501
109217AELECTRON MICROSCOPYLocal ncs0.059050.0501
109218AELECTRON MICROSCOPYLocal ncs0.059050.0501
110219AELECTRON MICROSCOPYLocal ncs0.074390.0501
110220AELECTRON MICROSCOPYLocal ncs0.074390.0501
111221AELECTRON MICROSCOPYLocal ncs0.053030.0501
111222AELECTRON MICROSCOPYLocal ncs0.053030.0501
112223AELECTRON MICROSCOPYLocal ncs0.087490.0501
112224AELECTRON MICROSCOPYLocal ncs0.087490.0501
113225AELECTRON MICROSCOPYLocal ncs0.081510.05009
113226AELECTRON MICROSCOPYLocal ncs0.081510.05009
114227AELECTRON MICROSCOPYLocal ncs0.082940.05009
114228AELECTRON MICROSCOPYLocal ncs0.082940.05009
115229AELECTRON MICROSCOPYLocal ncs0.088710.05009
115230AELECTRON MICROSCOPYLocal ncs0.088710.05009
116231AELECTRON MICROSCOPYLocal ncs0.085960.05009
116232AELECTRON MICROSCOPYLocal ncs0.085960.05009
117233AELECTRON MICROSCOPYLocal ncs0.055730.0501
117234AELECTRON MICROSCOPYLocal ncs0.055730.0501
118235AELECTRON MICROSCOPYLocal ncs0.070890.0501
118236AELECTRON MICROSCOPYLocal ncs0.070890.0501
119237AELECTRON MICROSCOPYLocal ncs0.04680.0501
119238AELECTRON MICROSCOPYLocal ncs0.04680.0501
120239AELECTRON MICROSCOPYLocal ncs0.083470.0501
120240AELECTRON MICROSCOPYLocal ncs0.083470.0501
121241AELECTRON MICROSCOPYLocal ncs0.072590.05009
121242AELECTRON MICROSCOPYLocal ncs0.072590.05009
122243AELECTRON MICROSCOPYLocal ncs0.068070.0501
122244AELECTRON MICROSCOPYLocal ncs0.068070.0501
123245AELECTRON MICROSCOPYLocal ncs0.093330.05009
123246AELECTRON MICROSCOPYLocal ncs0.093330.05009
124247AELECTRON MICROSCOPYLocal ncs0.076790.0501
124248AELECTRON MICROSCOPYLocal ncs0.076790.0501
125249AELECTRON MICROSCOPYLocal ncs0.047330.0501
125250AELECTRON MICROSCOPYLocal ncs0.047330.0501
126251AELECTRON MICROSCOPYLocal ncs0.083150.0501
126252AELECTRON MICROSCOPYLocal ncs0.083150.0501
127253AELECTRON MICROSCOPYLocal ncs0.077060.05009
127254AELECTRON MICROSCOPYLocal ncs0.077060.05009
128255AELECTRON MICROSCOPYLocal ncs0.09540.05009
128256AELECTRON MICROSCOPYLocal ncs0.09540.05009
129257AELECTRON MICROSCOPYLocal ncs0.072830.0501
129258AELECTRON MICROSCOPYLocal ncs0.072830.0501
130259AELECTRON MICROSCOPYLocal ncs0.088220.0501
130260AELECTRON MICROSCOPYLocal ncs0.088220.0501
131261AELECTRON MICROSCOPYLocal ncs0.093590.05009
131262AELECTRON MICROSCOPYLocal ncs0.093590.05009
132263AELECTRON MICROSCOPYLocal ncs0.08320.0501
132264AELECTRON MICROSCOPYLocal ncs0.08320.0501
LS refinement shell

Refine-ID: ELECTRON MICROSCOPY / Num. reflection Rfree: _ / Total num. of bins used: 20 / % reflection obs: 100 %

Resolution (Å)Rfactor RworkNum. reflection RworkRfactor allNum. reflection allFsc workWRfactor Rwork
3.15-3.2320.62160910.62160910.5710.62
3.232-3.320.436155810.436155810.6770.436
3.32-3.4170.399152740.399152740.730.399
3.417-3.5220.388148410.388148410.7560.388
3.522-3.6370.366142690.366142690.7890.366
3.637-3.7650.339139080.339139080.8270.339
3.765-3.9070.324133870.324133870.8470.324
3.907-4.0660.315129160.315129160.8560.315
4.066-4.2470.299122570.299122570.8780.299
4.247-4.4540.289118320.289118320.8890.289
4.454-4.6950.282112200.282112200.8940.282
4.695-4.9790.278105830.278105830.8940.278
4.979-5.3230.27899640.27899640.8910.278
5.323-5.7480.29993140.29993140.8850.299
5.748-6.2960.33185550.33185550.8730.331
6.296-7.0380.30677080.30677080.8840.306
7.038-8.1240.26968370.26968370.8970.269
8.124-9.9430.2457270.2457270.930.24
9.943-14.0340.22444630.22444630.9470.224
14.034-157.320.23124550.23124550.9830.231

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