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- PDB-7omm: Cryo-EM structure of N. gonorhoeae LptDE in complex with ProMacro... -
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Basic information
Entry | Database: PDB / ID: 7omm | ||||||
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Title | Cryo-EM structure of N. gonorhoeae LptDE in complex with ProMacrobodies (MBPs have not been built de novo) | ||||||
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![]() | TRANSPORT PROTEIN / Outer membrane protein LPS transporter Bacterial transporter Neisseria gonorrhoeae Drug target ProMacrobodies Structural chaperone Cryo-electron microscopy | ||||||
Function / homology | ![]() lipopolysaccharide transport / Gram-negative-bacterium-type cell outer membrane assembly / carbohydrate transmembrane transporter activity / : / cell outer membrane Similarity search - Function | ||||||
Biological species | ![]() synthetic construct (others) ![]() | ||||||
Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 3.4 Å | ||||||
![]() | Botte, M. / Ni, D. / Schenck, S. / Zimmermann, I. / Chami, M. / Bocquet, N. / Egloff, P. / Bucher, D. / Trabuco, M. / Cheng, R.K.Y. ...Botte, M. / Ni, D. / Schenck, S. / Zimmermann, I. / Chami, M. / Bocquet, N. / Egloff, P. / Bucher, D. / Trabuco, M. / Cheng, R.K.Y. / Brunner, J.D. / Seeger, M.A. / Stahlberg, H. / Hennig, M. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Cryo-EM structures of a LptDE transporter in complex with Pro-macrobodies offer insight into lipopolysaccharide translocation. Authors: Mathieu Botte / Dongchun Ni / Stephan Schenck / Iwan Zimmermann / Mohamed Chami / Nicolas Bocquet / Pascal Egloff / Denis Bucher / Matilde Trabuco / Robert K Y Cheng / Janine D Brunner / ...Authors: Mathieu Botte / Dongchun Ni / Stephan Schenck / Iwan Zimmermann / Mohamed Chami / Nicolas Bocquet / Pascal Egloff / Denis Bucher / Matilde Trabuco / Robert K Y Cheng / Janine D Brunner / Markus A Seeger / Henning Stahlberg / Michael Hennig / ![]() ![]() Abstract: Lipopolysaccharides are major constituents of the extracellular leaflet in the bacterial outer membrane and form an effective physical barrier for environmental threats and for antibiotics in Gram- ...Lipopolysaccharides are major constituents of the extracellular leaflet in the bacterial outer membrane and form an effective physical barrier for environmental threats and for antibiotics in Gram-negative bacteria. The last step of LPS insertion via the Lpt pathway is mediated by the LptD/E protein complex. Detailed insights into the architecture of LptDE transporter complexes have been derived from X-ray crystallography. However, no structure of a laterally open LptD transporter, a transient state that occurs during LPS release, is available to date. Here, we report a cryo-EM structure of a partially opened LptDE transporter in complex with rigid chaperones derived from nanobodies, at 3.4 Å resolution. In addition, a subset of particles allows to model a structure of a laterally fully opened LptDE complex. Our work offers insights into the mechanism of LPS insertion, provides a structural framework for the development of antibiotics targeting LptD and describes a highly rigid chaperone scaffold to enable structural biology of challenging protein targets. | ||||||
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-Validation report
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Data in XML | ![]() | 52.5 KB | Display | |
Data in CIF | ![]() | 79.4 KB | Display | |
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-Related structure data
Related structure data | ![]() 12990MC ![]() 7omtC M: map data used to model this data C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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