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- ChemComp-NPI: (2S)-2-aminoheptanedioic acid -

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Basic information

EntryDatabase: PDB chemical components / ID: NPI
NameName: (2S)-2-aminoheptanedioic acid / Synonyms: L-2-AMINOPIMELIC ACID

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Chemical information

Composition
Formula: C7H13NO4 / Number of atoms: 25 / Formula weight: 175.182 / Formal charge: 0
Others

2tdt

ALA

Type: L-PEPTIDE LINKING / PDB classification: ATOMP / One letter code: A / Three letter code: NPI / Ideal coordinates details: Corina / Model coordinates PDB-ID: 2TDT / Parent comp.: ALA
History
Create componentJul 8, 1999
Modify descriptorJun 4, 2011
Other modificationJul 8, 2011
Modify synonymsJun 5, 2020
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 12.01O=C(O)C(N)CCCCC(=O)O
CACTVS 3.370N[CH](CCCCC(O)=O)C(O)=O
OpenEye OEToolkits 1.7.2C(CCC(=O)O)CC(C(=O)O)N

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SMILES CANONICAL

CACTVS 3.370N[C@@H](CCCCC(O)=O)C(O)=O
OpenEye OEToolkits 1.7.2C(CCC(=O)O)C[C@@H](C(=O)O)N

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InChI

InChI 1.03InChI=1S/C7H13NO4/c8-5(7(11)12)3-1-2-4-6(9)10/h5H,1-4,8H2,(H,9,10)(H,11,12)/t5-/m0/s1

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InChIKey

InChI 1.03JUQLUIFNNFIIKC-YFKPBYRVSA-N

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SYSTEMATIC NAME

ACDLabs 12.01(2S)-2-aminoheptanedioic acid
OpenEye OEToolkits 1.7.2(2S)-2-azanylheptanedioic acid

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PDB entries

Showing all 4 items

PDB-1kgq:
Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with L-2-aminopimelate and Succinamide-CoA

PDB-2tdt:
COMPLEX OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE WITH 2-AMINOPIMELATE AND COENZYME A

PDB-3r5b:
Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate

PDB-5e3r:
Crystal structure of DapD in complex with 2-aminopimelate from Corynebacterium glutamicum

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