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- ChemComp-JIA: (2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S},6~{R})-3-[(... -

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Basic information

EntryDatabase: PDB chemical components / ID: JIA
NameName: (2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S},6~{R})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(aminomethyl)-3-azany
Synonyms: JI-20A

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Chemical information

Composition
Formula: C19H39N5O9 / Number of atoms: 72 / Formula weight: 481.541 / Formal charge: 0
Others

5z8a

Type: NON-POLYMER / PDB classification: HETAIN / Three letter code: JIA / Ideal coordinates details: Corina / Model coordinates PDB-ID: 5Z8A
History
Create componentFeb 2, 2018
Modify model coordinates codeFeb 21, 2018
Initial releaseJan 16, 2019
Modify synonymsJun 5, 2020
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

CACTVS 3.385CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CN)[CH](O)[CH](O)[CH]3N)[CH]2O
OpenEye OEToolkits 2.0.6CC1(COC(C(C1NC)O)OC2C(CC(C(C2O)OC3C(C(C(C(O3)CN)O)O)N)N)N)O

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SMILES CANONICAL

CACTVS 3.385CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CN)[C@@H](O)[C@H](O)[C@H]3N)[C@@H]2O
OpenEye OEToolkits 2.0.6C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O[C@H]2[C@@H](C[C@@H]([C@H]([C@@H]2O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CN)O)O)N)N)N)O

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InChI

InChI 1.03InChI=1S/C19H39N5O9/c1-19(29)5-30-18(13(28)16(19)24-2)33-15-7(22)3-6(21)14(12(15)27)32-17-9(23)11(26)10(25)8(4-20)31-17/h6-18,24-29H,3-5,20-23H2,1-2H3/t6-,7+,8+,9+,10+,11+,12-,13+,14+,15-,16+,17+,18+,19-/m0/s1

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InChIKey

InChI 1.03YQGZDAPJXRYYLX-ZFAMMYHGSA-N

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PDB entries

Showing all 1 items

PDB-5z8a:
Crystal structure of GenB1 from Micromonospora echinospora in complex with JI-20A and PLP (external aldimine)

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