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- ChemComp-IE5: Biliverdine IX Alpha -

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Basic information

EntryDatabase: PDB chemical components / ID: IE5
NameName: Biliverdine ix Alpha
Synonyms: 3-[5-[(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl- ...Synonyms: 3-[5-[(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid

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Chemical information

Composition
Formula: C33H34N4O6 / Number of atoms: 77 / Formula weight: 582.646 / Formal charge: 0
Others

7y48

Type: non-polymer / PDB classification: HETAIN / Three letter code: IE5 / Ideal coordinates details: Corina / Model coordinates PDB-ID: 7Y48
History
Create componentJun 27, 2022
Other modificationMay 15, 2023
Initial releaseMay 24, 2023
Modify nameSep 20, 2023
External linksUniChem / ChemSpider / Brenda / ChEBI / ChEMBL / ChemicalBook / CompTox / DrugBank / HMDB / KEGG_Ligand / Metabolights / NMRShiftDB / Nikkaji / PubChem_TPharma / SureChEMBL / ZINC / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

CACTVS 3.385Cc1c([nH]c(C=C2N=C(C=C3NC(=O)C(=C3C)C=C)C(=C2CCC(O)=O)C)c1CCC(O)=O)C=C4NC(=O)C(=C4C=C)C
OpenEye OEToolkits 2.0.7Cc1c(c([nH]c1C=C2C(=C(C(=O)N2)C)C=C)C=C3C(=C(C(=N3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O

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SMILES CANONICAL

CACTVS 3.385Cc1c([nH]c(\C=C2/N=C(\C=C3/NC(=O)C(=C3C)C=C)C(=C2CCC(O)=O)C)c1CCC(O)=O)/C=C/4NC(=O)C(=C/4C=C)C
OpenEye OEToolkits 2.0.7Cc1c(c([nH]c1C=C2C(=C(C(=O)N2)C)C=C)/C=C\3/C(=C(C(=N3)/C=C\4/C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O

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InChI

InChI 1.06InChI=1S/C33H34N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,35H,1-2,9-12H2,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14-,28-15-

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InChIKey

InChI 1.06QBUVFDKTZJNUPP-BBROENKCSA-N

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PDB entries

Showing all 1 items

PDB-7y48:
Cryo-EM Structure of biliverdin-bound mitochondrial ABC transporter ABCB10 from Biortus

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