ChemComp-GE3: 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranose

Basic information

• Entry: Database: PDB chemical components / ID: GE3
• Name: Name: 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranose; Synonyms: 5-METHYL-4-METHYLAMINO-TETRAHYDRO-PYRAN-2,3,5-TRIOL; 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinose

Chemical information

Composition

Formula: C₇H₁₅NO₄ / Number of atoms: 27 / Formula weight: 177.198 / Formal charge: 0

Others

1byj

Type: L-saccharide, beta linking / PDB classification: ATOMS / Three letter code: GE3 / Model coordinates PDB-ID: 1BYJ

History

Create component	Aug 4, 1999
Modify descriptor	Jun 4, 2011
Other modification	Jul 3, 2020
Modify name	Jul 17, 2020
Modify synonyms	Jul 17, 2020
Modify internal type	Jul 17, 2020
Modify linking type	Jul 17, 2020
Modify atom id	Jul 17, 2020
Modify component atom id	Jul 17, 2020
Modify leaving atom flag	Jul 17, 2020

• External links: UniChem / ChemSpider / ChEBI / PubChem / SureChEMBL / Wikipedia search / Google search

Details

SMILES

• ACDLabs 10.04: OC1C(NC)C(O)(COC1O)C
• CACTVS 3.341: CN[CH]1[CH](O)[CH](O)OC[C]1(C)O
• OpenEye OEToolkits 1.5.0: CC1(COC(C(C1NC)O)O)O

SMILES CANONICAL

• CACTVS 3.341: CN[C@@H]1[C@@H](O)[C@@H](O)OC[C@]1(C)O
• OpenEye OEToolkits 1.5.0: C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O)O

InChI

• InChI 1.03: InChI=1S/C7H15NO4/c1-7(11)3-12-6(10)4(9)5(7)8-2/h4-6,8-11H,3H2,1-2H3/t4-,5-,6+,7+/m1/s1

InChIKey

• InChI 1.03: VXWORWYFOFDZLY-JWXFUTCRSA-N

SYSTEMATIC NAME

• ACDLabs 10.04: 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranose
• OpenEye OEToolkits 1.5.0: (2S,3R,4R,5R)-5-methyl-4-methylamino-oxane-2,3,5-triol

PDB entries

Showing all 1 items

PDB-1byj:
GENTAMICIN C1A A-SITE COMPLEX