+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-6911 | ||||||||||||
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Title | Cryo-EM structure of human TRPC3 at 4.36A resolution | ||||||||||||
Map data | |||||||||||||
Sample |
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Keywords | TRPC3 channel / MEMBRANE PROTEIN | ||||||||||||
Function / homology | : Function and homology information | ||||||||||||
Biological species | Homo sapiens (human) | ||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 4.36 Å | ||||||||||||
Authors | Chen L / Tang Q | ||||||||||||
Funding support | China, 3 items
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Citation | Journal: Cell Res / Year: 2018 Title: Structure of the receptor-activated human TRPC6 and TRPC3 ion channels. Authors: Qinglin Tang / Wenjun Guo / Li Zheng / Jing-Xiang Wu / Meng Liu / Xindi Zhou / Xiaolin Zhang / Lei Chen / Abstract: TRPC6 and TRPC3 are receptor-activated nonselective cation channels that belong to the family of canonical transient receptor potential (TRPC) channels. They are activated by diacylglycerol, a lipid ...TRPC6 and TRPC3 are receptor-activated nonselective cation channels that belong to the family of canonical transient receptor potential (TRPC) channels. They are activated by diacylglycerol, a lipid second messenger. TRPC6 and TRPC3 are involved in many physiological processes and implicated in human genetic diseases. Here we present the structure of human TRPC6 homotetramer in complex with a newly identified high-affinity inhibitor BTDM solved by single-particle cryo-electron microscopy to 3.8 Å resolution. We also present the structure of human TRPC3 at 4.4 Å resolution. These structures show two-layer architectures in which the bell-shaped cytosolic layer holds the transmembrane layer. Extensive inter-subunit interactions of cytosolic domains, including the N-terminal ankyrin repeats and the C-terminal coiled-coil, contribute to the tetramer assembly. The high-affinity inhibitor BTDM wedges between the S5-S6 pore domain and voltage sensor-like domain to inhibit channel opening. Our structures uncover the molecular architecture of TRPC channels and provide a structural basis for understanding the mechanism of these channels. | ||||||||||||
History |
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-Structure visualization
Movie |
Movie viewer |
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Structure viewer | EM map: SurfViewMolmilJmol/JSmol |
Supplemental images |
-Downloads & links
-EMDB archive
Map data | emd_6911.map.gz | 28.4 MB | EMDB map data format | |
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Header (meta data) | emd-6911-v30.xml emd-6911.xml | 10.1 KB 10.1 KB | Display Display | EMDB header |
Images | emd_6911.png | 133.2 KB | ||
Filedesc metadata | emd-6911.cif.gz | 5.3 KB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-6911 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-6911 | HTTPS FTP |
-Validation report
Summary document | emd_6911_validation.pdf.gz | 541.5 KB | Display | EMDB validaton report |
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Full document | emd_6911_full_validation.pdf.gz | 541.1 KB | Display | |
Data in XML | emd_6911_validation.xml.gz | 5.8 KB | Display | |
Data in CIF | emd_6911_validation.cif.gz | 6.6 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-6911 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-6911 | HTTPS FTP |
-Related structure data
Related structure data | 5zbgMC 6856C 5yx9C M: atomic model generated by this map C: citing same article (ref.) |
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Similar structure data |
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_6911.map.gz / Format: CCP4 / Size: 30.5 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 1.37 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
-Sample components
-Entire : hTRPC3 homo-tetramer
Entire | Name: hTRPC3 homo-tetramer |
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Components |
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-Supramolecule #1: hTRPC3 homo-tetramer
Supramolecule | Name: hTRPC3 homo-tetramer / type: organelle_or_cellular_component / ID: 1 / Parent: 0 / Macromolecule list: all |
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Source (natural) | Organism: Homo sapiens (human) |
-Macromolecule #1: Short transient receptor potential channel 3
Macromolecule | Name: Short transient receptor potential channel 3 / type: protein_or_peptide / ID: 1 / Number of copies: 4 / Enantiomer: LEVO |
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Source (natural) | Organism: Homo sapiens (human) |
Molecular weight | Theoretical: 97.465836 KDa |
Recombinant expression | Organism: Homo sapiens (human) |
Sequence | String: MEGSPSLRRM TVMREKGRRQ AVRGPAFMFN DRGTSLTAEE ERFLDAAEYG NIPVVRKMLE ESKTLNVNCV DYMGQNALQL AVGNEHLEV TELLLKKENL ARIGDALLLA ISKGYVRIVE AILNHPGFAA SKRLTLSPCE QELQDDDFYA YDEDGTRFSP D ITPIILAA ...String: MEGSPSLRRM TVMREKGRRQ AVRGPAFMFN DRGTSLTAEE ERFLDAAEYG NIPVVRKMLE ESKTLNVNCV DYMGQNALQL AVGNEHLEV TELLLKKENL ARIGDALLLA ISKGYVRIVE AILNHPGFAA SKRLTLSPCE QELQDDDFYA YDEDGTRFSP D ITPIILAA HCQKYEVVHM LLMKGARIER PHDYFCKCGD CMEKQRHDSF SHSRSRINAY KGLASPAYLS LSSEDPVLTA LE LSNELAK LANIEKEFKN DYRKLSMQCK DFVVGVLDLC RDSEEVEAIL NGDLESAEPL EVHRHKASLS RVKLAIKYEV KKF VAHPNC QQQLLTIWYE NLSGLREQTI AIKCLVVLVV ALGLPFLAIG YWIAPCSRLG KILRSPFMKF VAHAASFIIF LGLL VFNAS DRFEGITTLP NITVTDYPKQ IFRVKTTQFT WTEMLIMVWV LGMMWSECKE LWLEGPREYI LQLWNVLDFG MLSIF IAAF TARFLAFLQA TKAQQYVDSY VQESDLSEVT LPPEIQYFTY ARDKWLPSDP QIISEGLYAI AVVLSFSRIA YILPAN ESF GPLQISLGRT VKDIFKFMVL FIMVFFAFMI GMFILYSYYL GAKVNAAFTT VEESFKTLFW SIFGLSEVTS VVLKYDH KF IENIGYVLYG IYNVTMVVVL LNMLIAMINS SYQEIEDDSD VEWKFARSKL WLSYFDDGKT LPPPFSLVPS PKSFVYFI M RIVNFPKCRR RRLQKDIEMG MGNSKSRLNL FTQSNSRVFE SHSFNSILNQ PTRYQQIMKR LIKRYVLKAQ VDKENDEVN EGELKEIKQD ISSLRYELLE DKSQATEELA ILIHKLSEKL NPSMLRCE UniProtKB: UNIPROTKB: Q13507 |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.5 |
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Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: SUPER-RESOLUTION / Average electron dose: 50.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |
-Image processing
Startup model | Type of model: NONE |
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Final reconstruction | Applied symmetry - Point group: C4 (4 fold cyclic) / Resolution.type: BY AUTHOR / Resolution: 4.36 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC / Number images used: 22220 |
Initial angle assignment | Type: OTHER |
Final angle assignment | Type: OTHER |