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- ChemComp-SLL: (2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid -

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Basic information

EntryDatabase: PDB chemical components / ID: SLL
NameName: (2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid
Synonyms: 6-N-succinyl-L-lysine

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Chemical information

Composition
Formula: C10H18N2O5 / Number of atoms: 35 / Formula weight: 246.26 / Formal charge: 0
Others

3ltt
PDB Unreleased entry

LYS

Type: L-peptide linking / PDB classification: ATOMP / Three letter code: SLL / Ideal coordinates details: Corina / Model coordinates PDB-ID: 3LTT / Parent comp.: LYS
History
Create componentMar 4, 2010
Modify descriptorJun 4, 2011
Modify synonymsJun 5, 2020
Modify backboneNov 3, 2023
External linksUniChem / ChemSpider / Nikkaji / PubChem / ZINC / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 12.01O=C(O)C(N)CCCCNC(=O)CCC(=O)O
CACTVS 3.370N[CH](CCCCNC(=O)CCC(O)=O)C(O)=O
OpenEye OEToolkits 1.7.0C(CCNC(=O)CCC(=O)O)CC(C(=O)O)N

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SMILES CANONICAL

CACTVS 3.370N[C@@H](CCCCNC(=O)CCC(O)=O)C(O)=O
OpenEye OEToolkits 1.7.0C(CCNC(=O)CCC(=O)O)C[C@@H](C(=O)O)N

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InChI

InChI 1.03InChI=1S/C10H18N2O5/c11-7(10(16)17)3-1-2-6-12-8(13)4-5-9(14)15/h7H,1-6,11H2,(H,12,13)(H,14,15)(H,16,17)/t7-/m0/s1

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InChIKey

InChI 1.03ZAFOVBXOMIXMTH-ZETCQYMHSA-N

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SYSTEMATIC NAME

ACDLabs 12.01N~6~-(3-carboxypropanoyl)-L-lysine
OpenEye OEToolkits 1.7.0(2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid

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PDB entries

Showing all 2 items

PDB-5wyi:
The Yaf9 YEATS domain Recognizing H3K122suc Peptide

PDB-5xhs:
Crystal structure of SIRT5 complexed with a fluorogenic small-molecule substrate SuBKA

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