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- ChemComp-GRF: 5-O-phosphono-beta-D-ribofuranosylamine -

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Basic information

EntryDatabase: PDB chemical components / ID: GRF
NameName: 5-O-phosphono-beta-D-ribofuranosylamine
Synonyms: 5-O-phosphono-beta-D-ribosylamine; 5-O-phosphono-D-ribosylamine; 5-O-phosphono-ribosylamine

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Chemical information

Composition
Formula: C5H12NO7P / Number of atoms: 26 / Formula weight: 229.125 / Formal charge: 0
Others

1zly

Type: D-saccharide, beta linking / PDB classification: ATOMS / Three letter code: GRF / Model coordinates PDB-ID: 1ZLY
History
Create componentJun 16, 2005
Modify descriptorJun 4, 2011
Other modificationJul 3, 2020
Modify nameJul 17, 2020
Modify synonymsJul 17, 2020
Modify internal typeJul 17, 2020
Modify linking typeJul 17, 2020
Modify atom idJul 17, 2020
Modify component atom idJul 17, 2020
Modify leaving atom flagJul 17, 2020
External linksUniChem / ChemSpider / Brenda / ChEBI / HMDB / KEGG_Ligand / Metabolights / NMRShiftDB / Nikkaji / PubChem / SureChEMBL / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 10.04O=P(O)(O)OCC1OC(N)C(O)C1O
CACTVS 3.341N[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)N)O)O)OP(=O)(O)O

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SMILES CANONICAL

CACTVS 3.341N[C@@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@H]([C@@H](O1)N)O)O)OP(=O)(O)O

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InChI

InChI 1.03InChI=1S/C5H12NO7P/c6-5-4(8)3(7)2(13-5)1-12-14(9,10)11/h2-5,7-8H,1,6H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1

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InChIKey

InChI 1.03SKCBPEVYGOQGJN-TXICZTDVSA-N

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SYSTEMATIC NAME

ACDLabs 10.045-O-phosphono-beta-D-ribofuranosylamine
OpenEye OEToolkits 1.5.0[(2R,3S,4R,5R)-5-amino-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

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PDB entries

Showing all 1 items

PDB-1zly:
The structure of human glycinamide ribonucleotide transformylase in complex with alpha,beta-N-(hydroxyacetyl)-D-ribofuranosylamine and 10-formyl-5,8,dideazafolate

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