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- ChemComp-2DR: 2-deoxy-beta-D-erythro-pentofuranose -

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Basic information

EntryDatabase: PDB chemical components / ID: 2DR
NameName: 2-deoxy-beta-D-erythro-pentofuranose
Synonyms: 2-deoxy-beta-D-ribofuranose; 2-deoxy-beta-D-erythro-pentose; 2-deoxy-D-erythro-pentose; 2-deoxy-erythro-pentose

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Chemical information

Composition
Formula: C5H10O4 / Number of atoms: 19 / Formula weight: 134.13 / Formal charge: 0
Others

2wnv

Type: D-saccharide, beta linking / PDB classification: ATOMS / Three letter code: 2DR / Ideal coordinates details: Corina / Model coordinates PDB-ID: 2WNV
History
Create componentJul 20, 2009
Modify descriptorJun 4, 2011
Other modificationJul 3, 2020
Modify synonymsJul 17, 2020
Modify internal typeJul 17, 2020
Modify linking typeJul 17, 2020
Modify atom idJul 17, 2020
Modify component atom idJul 17, 2020
Modify leaving atom flagJul 17, 2020
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 10.04OCC1OC(O)CC1O
CACTVS 3.352OC[CH]1O[CH](O)C[CH]1O
OpenEye OEToolkits 1.6.1C1C(C(OC1O)CO)O

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SMILES CANONICAL

CACTVS 3.352OC[C@H]1O[C@@H](O)C[C@@H]1O
OpenEye OEToolkits 1.6.1C1[C@@H]([C@H](O[C@H]1O)CO)O

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InChI

InChI 1.03InChI=1S/C5H10O4/c6-2-4-3(7)1-5(8)9-4/h3-8H,1-2H2/t3-,4+,5+/m0/s1

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InChIKey

InChI 1.03PDWIQYODPROSQH-VPENINKCSA-N

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SYSTEMATIC NAME

ACDLabs 10.042-deoxy-beta-D-erythro-pentofuranose
OpenEye OEToolkits 1.6.1(2R,4S,5R)-5-(hydroxymethyl)oxolane-2,4-diol

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PDB entries

Showing all 3 items

PDB-2wnv:
Complex between C1q globular heads and deoxyribose

PDB-9f08:
Nucleoside-2'-deoxyribosyltransferase from Lactobacillus leichmannii. Covalent complex with 2-deoxyribose.

PDB-9f09:
Nucleoside-2'-deoxyribosyltransferase from Lactobacillus leichmannii. Complex with 2-deoxyribose, 7-Bromo-1H-imidazo[4,5-b]pyridine and 2'-deoxycytidine

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