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- PDB-1d69: SOLUTION STRUCTURE OF [D(ATGAGCGAATA)]2: ADJACENT G:A MISMATCHES ... -

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Basic information

Entry
Database: PDB / ID: 1d69
TitleSOLUTION STRUCTURE OF [D(ATGAGCGAATA)]2: ADJACENT G:A MISMATCHES STABILIZED BY CROSS-STRAND BASE-STACKING AND BII PHOSPHATE GROUPS
ComponentsDNA (5'-D(P*AP*TP*GP*AP*GP*CP*GP*AP*AP*TP*A)-3')
KeywordsDNA / DOUBLE HELIX / SHEARED HYDROGEN BONDING
Function / homologyDNA / DNA (> 10)
Function and homology information
MethodSOLUTION NMR
AuthorsChou, S.-H. / Cheng, J.-W. / Reid, B.R.
CitationJournal: J.Mol.Biol. / Year: 1992
Title: Solution structure of [d(ATGAGCGAATA)]2. Adjacent G:A mismatches stabilized by cross-strand base-stacking and BII phosphate groups.
Authors: Chou, S.H. / Cheng, J.W. / Reid, B.R.
History
DepositionApr 15, 1992Processing site: BNL
Revision 1.0Apr 15, 1993Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 16, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: DNA (5'-D(P*AP*TP*GP*AP*GP*CP*GP*AP*AP*TP*A)-3')
B: DNA (5'-D(P*AP*TP*GP*AP*GP*CP*GP*AP*AP*TP*A)-3')


Theoretical massNumber of molelcules
Total (without water)6,8132
Polymers6,8132
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)1 / -
Representative

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Components

#1: DNA chain DNA (5'-D(P*AP*TP*GP*AP*GP*CP*GP*AP*AP*TP*A)-3')


Mass: 3406.261 Da / Num. of mol.: 2 / Source method: obtained synthetically / Details: CHEMICALLY SYNTHESIZED

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR
NMR detailsText: THE 3' OVERHANGING ADENOSINE RESIDUES WERE NOT INCLUDED IN THE BACK-CALCULATION AND NO COORDINATES ARE PRESENTED FOR THEM IN THIS ENTRY.

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

NMR ensembleConformers submitted total number: 1

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