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- ChemComp-8NK: 7-methylguanosine 5'-diphosphate -

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Basic information

EntryDatabase: PDB chemical components / ID: 8NK
NameName: 7-methylguanosine 5'-diphosphate

Chemical information

Formula: C11H18N5O11P2 / Number of atoms: 47 / Formula weight: 458.235 / Formal charge: 1
OthersType: NON-POLYMER / PDB classification: HETAIN / Three letter code: 8NK / Ideal coordinates details: Corina / Model coordinates PDB-ID: 5N2V
Create componentFeb 13, 2017
Initial releaseMay 24, 2017
External linksBrenda / UniChem / ChEBI / HMDB / Nikkaji / PubChem / PubChem_TPharma / ZINC / ChemSpider / Wikipedia search / Google search

Structure visualization

Structure viewerMolecule:



CACTVS 3.385C[n+]1cn([CH]2O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O)c3N=C(N)NC(=O)c13
OpenEye OEToolkits 2.0.6C[n+]1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O


CACTVS 3.385C[n+]1cn([C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O)c3N=C(N)NC(=O)c13
OpenEye OEToolkits 2.0.6C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O


InChI 1.03InChI=1S/C11H17N5O11P2/c1-15-3-16(8-5(15)9(19)14-11(12)13-8)10-7(18)6(17)4(26-10)2-25-29(23,24)27-28(20,21)22/h3-4,6-7,10,17-18H,2H2,1H3,(H5-,12,13,14,19,20,21,22,23,24)/p+1/t4-,6-,7-,10-/m1/s1




OpenEye OEToolkits 2.0.6[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate

PDB entries

Showing all 3 items

Changes in conformational equilibria regulate the activity of the Dcp2 decapping enzyme

Crystal Structure of Nsp16-Nsp10 Heterodimer from SARS-CoV-2 in Complex with 7-methyl-GpppA and S-adenosyl-L-homocysteine.

Room Temperature Structure of SARS-CoV-2 Nsp10/Nsp16 Methyltransferase in a Complex with m7GpppA Cap-0 and SAM Determined by Fixed-Target Serial Crystallography

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