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- ChemComp-6S8: (~{Z})-~{N}-[(~{E},2~{S},3~{R})-1-[(2~{R},3~{R},4~{S},5~{R},6~{R}... -

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Basic information

EntryDatabase: PDB chemical components / ID: 6S8
NameName: (~{Z})-~{N}-[(~{E},2~{S},3~{R})-1-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]octadec-9-enamide
Synonyms: N-(9Z-octadecenoyl)-1-beta-galactosyl-sphing-4-enine

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Chemical information

Composition
Formula: C42H79NO8 / Number of atoms: 130 / Formula weight: 726.079 / Formal charge: 0
Others

5kdi

Type: NON-POLYMER / PDB classification: HETAIN / Three letter code: 6S8 / Ideal coordinates details: Corina / Model coordinates PDB-ID: 5KDI
History
Create componentJun 13, 2016
Initial releaseDec 13, 2017
Modify synonymsMar 1, 2021
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

CACTVS 3.385CCCCCCCCCCCCCC=C[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCCC=CCCCCCCCC
OpenEye OEToolkits 2.0.5CCCCCCCCCCCCCC=CC(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCCC=CCCCCCCCC)O

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SMILES CANONICAL

CACTVS 3.385CCCCCCCCCCCCC/C=C/[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC\C=C/CCCCCCCC
OpenEye OEToolkits 2.0.5CCCCCCCCCCCCC/C=C/[C@H]([C@H](CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCC/C=C\CCCCCCCC)O

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InChI

InChI 1.03InChI=1S/C42H79NO8/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-38(46)43-35(34-50-42-41(49)40(48)39(47)37(33-44)51-42)36(45)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,29,31,35-37,39-42,44-45,47-49H,3-16,19-28,30,32-34H2,1-2H3,(H,43,46)/b18-17-,31-29+/t35-,36+,37+,39-,40-,41+,42+/m0/s1

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InChIKey

InChI 1.03MVGFIPNJBNBHNC-VTRIZHIOSA-N

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PDB entries

Showing all 1 items

PDB-5kdi:
How FAPP2 Selects Simple Glycosphingolipids Using the GLTP-fold

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