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Yorodumi- PDB-6kma: Crystal structure of SucA with glycolaldehyde-1-13C from Vibrio v... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6kma | ||||||
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Title | Crystal structure of SucA with glycolaldehyde-1-13C from Vibrio vulnificus | ||||||
Components | Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component | ||||||
Keywords | OXIDOREDUCTASE / DEHYDROGENASE | ||||||
Function / homology | Function and homology information oxoglutarate dehydrogenase (succinyl-transferring) / oxoglutarate dehydrogenase (succinyl-transferring) activity / thiamine pyrophosphate binding / tricarboxylic acid cycle Similarity search - Function | ||||||
Biological species | Vibrio vulnificus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.282 Å | ||||||
Authors | Seo, P.W. / Kim, J.S. | ||||||
Funding support | Korea, Republic Of, 1items
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Citation | Journal: Catalysis Science And Technology / Year: 2020 Title: Understanding the molecular properties of the E1 subunit (SucA) of alpha-ketoglutarate dehydrogenase complex from Vibrio vulnificus for the enantioselective ligation of acetaldehydes into (R)-acetoin. Authors: Seo, P.W. / Jo, H.J. / Hwang, I.Y. / Jeong, H.Y. / Kim, J.H. / Kim, J.W. / Lee, E.Y. / Park, J.B. / Kim, J.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6kma.cif.gz | 1.3 MB | Display | PDBx/mmCIF format |
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PDB format | pdb6kma.ent.gz | 1.1 MB | Display | PDB format |
PDBx/mmJSON format | 6kma.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6kma_validation.pdf.gz | 5.3 MB | Display | wwPDB validaton report |
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Full document | 6kma_full_validation.pdf.gz | 5.4 MB | Display | |
Data in XML | 6kma_validation.xml.gz | 126.3 KB | Display | |
Data in CIF | 6kma_validation.cif.gz | 176.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/km/6kma ftp://data.pdbj.org/pub/pdb/validation_reports/km/6kma | HTTPS FTP |
-Related structure data
Related structure data | 6km9C 2jgdS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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