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- PDB-5mei: Crystal structure of Agelastatin A bound to the 80S ribosome -

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基本情報

登録情報
データベース: PDB / ID: 5mei
タイトルCrystal structure of Agelastatin A bound to the 80S ribosome
要素
  • (40S ribosomal protein ...) x 32
  • (60S ribosomal protein ...) x 40
  • (Suppressor protein ...) x 2
  • (Ubiquitin-40S ribosomal protein ...) x 2
  • 18S ribosomal RNA
  • 25S ribosomal RNA
  • 5.8S ribosomal RNA
  • 5S ribosomal RNA
  • 60S acidic ribosomal protein P0
  • Guanine nucleotide-binding protein subunit beta-like protein
  • Ubiquitin-60S ribosomal protein L40
キーワードRIBOSOME / 80S ribosome / protein synthesis inhibitor
機能・相同性
機能・相同性情報


triplex DNA binding / ribosome hibernation / translation elongation factor binding / Platelet degranulation / regulation of translational initiation in response to stress / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / Negative regulators of DDX58/IFIH1 signaling / regulation of amino acid metabolic process / negative regulation of glucose mediated signaling pathway / positive regulation of translational fidelity ...triplex DNA binding / ribosome hibernation / translation elongation factor binding / Platelet degranulation / regulation of translational initiation in response to stress / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / Negative regulators of DDX58/IFIH1 signaling / regulation of amino acid metabolic process / negative regulation of glucose mediated signaling pathway / positive regulation of translational fidelity / RMTs methylate histone arginines / Protein methylation / mTORC1-mediated signalling / Protein hydroxylation / ribosome-associated ubiquitin-dependent protein catabolic process / GDP-dissociation inhibitor activity / regulation of polysaccharide biosynthetic process / positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay / Formation of the ternary complex, and subsequently, the 43S complex / Translation initiation complex formation / Ribosomal scanning and start codon recognition / preribosome, small subunit precursor / nonfunctional rRNA decay / transporter complex / cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / response to cycloheximide / telomeric DNA binding / Major pathway of rRNA processing in the nucleolus and cytosol / mRNA destabilization / lipopolysaccharide transport / SRP-dependent cotranslational protein targeting to membrane / GTP hydrolysis and joining of the 60S ribosomal subunit / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / negative regulation of translational frameshifting / TOR signaling / Formation of a pool of free 40S subunits / positive regulation of protein kinase activity / preribosome, large subunit precursor / L13a-mediated translational silencing of Ceruloplasmin expression / Gram-negative-bacterium-type cell outer membrane assembly / endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit export from nucleus / translational elongation / G-protein alpha-subunit binding / 90S preribosome / Ub-specific processing proteases / ribosomal subunit export from nucleus / regulation of translational fidelity / endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / protein-RNA complex assembly / maturation of LSU-rRNA / translational termination / ribosomal small subunit export from nucleus / translation regulator activity / translation repressor activity / DNA-(apurinic or apyrimidinic site) endonuclease activity / rescue of stalled ribosome / telomere maintenance / protein kinase C binding / cellular response to amino acid starvation / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal large subunit biogenesis / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosome assembly / maturation of SSU-rRNA / macroautophagy / small-subunit processome / translational initiation / modification-dependent protein catabolic process / protein tag activity / maintenance of translational fidelity / cell outer membrane / cytoplasmic stress granule / rRNA processing / ribosome biogenesis / ribosome binding / ribosomal small subunit biogenesis / ribosomal small subunit assembly / small ribosomal subunit / 5S rRNA binding / small ribosomal subunit rRNA binding / ribosomal large subunit assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / protein ubiquitination / negative regulation of translation / rRNA binding / structural constituent of ribosome / ribosome / translation / G protein-coupled receptor signaling pathway / negative regulation of gene expression / response to antibiotic / mRNA binding / ubiquitin protein ligase binding / negative regulation of apoptotic process / nucleolus
類似検索 - 分子機能
Stm1-like, N-terminal / Stm1 / Hyaluronan/mRNA-binding protein / Hyaluronan / mRNA binding family / 60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / LptD, C-terminal / LPS-assembly protein LptD / : ...Stm1-like, N-terminal / Stm1 / Hyaluronan/mRNA-binding protein / Hyaluronan / mRNA binding family / 60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / LptD, C-terminal / LPS-assembly protein LptD / : / LPS transport system D / Organic solvent tolerance-like, N-terminal / LptA/(LptD N-terminal domain) LPS transport protein / Group II dsDNA virus coat/capsid protein / 50S ribosomal protein L10, insertion domain superfamily / : / 60S ribosomal protein L10P, insertion domain / Insertion domain in 60S ribosomal protein L10P / Ribosomal protein L13e / : / Ribosomal protein S26e signature. / Ribosomal protein L41 / Ribosomal protein L41 / Ribosomal protein S21e, conserved site / Ribosomal protein S21e signature. / Ribosomal protein S26e / Ribosomal protein S26e superfamily / Ribosomal protein S26e / : / Ribosomal protein S12e signature. / Ribosomal protein S12e / Ribosomal protein L29e / Ribosomal L29e protein family / Ribosomal protein S19e, conserved site / Ribosomal protein S19e signature. / Ribosomal protein S5, eukaryotic/archaeal / Small (40S) ribosomal subunit Asc1/RACK1 / Ribosomal protein S21e / Ribosomal protein S21e superfamily / Ribosomal protein S21e / Ribosomal protein S2, eukaryotic / Ribosomal protein L22e / Ribosomal protein L22e superfamily / Ribosomal L22e protein family / Ribosomal protein L27e, conserved site / Ribosomal protein L27e signature. / Ribosomal protein L10e, conserved site / Ribosomal protein L10e signature. / S27a-like superfamily / Ribosomal protein L38e / Ribosomal protein L38e superfamily / Ribosomal L38e protein family / Ribosomal protein L10e / 40S Ribosomal protein S10 / : / Ribosomal protein L44e signature. / Ribosomal protein S7e signature. / Ribosomal protein L24e, conserved site / Ribosomal protein L24e signature. / Ribosomal protein L19/L19e conserved site / Ribosomal protein L19, eukaryotic / Ribosomal protein L19e signature. / Plectin/S10, N-terminal / Plectin/S10 domain / : / 60S ribosomal protein L18a/ L20, eukaryotes / Ribosomal protein L6e signature. / Ribosomal protein S10, eukaryotic/archaeal / Ribosomal protein S8e subdomain, eukaryotes / : / Ribosomal protein S17e, conserved site / Ribosomal protein S17e signature. / Ribosomal protein S25 / S25 ribosomal protein / Ribosomal protein L44e / Ribosomal protein S3Ae, conserved site / Ribosomal protein L44 / Ribosomal protein S3Ae signature. / Ribosomal protein S30 / Ribosomal protein S30 / Ribosomal protein S27a / Ribosomal protein L34e, conserved site / Ribosomal protein S27a / Ribosomal protein L34e signature. / Ribosomal protein S27a / Ribosomal protein S2, eukaryotic/archaeal / Ribosomal protein L5 eukaryotic, C-terminal / 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a / Ribosomal L18 C-terminal region / Ribosomal L40e family / Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A / Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A / Ribosomal protein 60S L18 and 50S L18e / Ribosomal_L40e / Ribosomal protein L40e / Ribosomal protein L40e superfamily / Ribosomal protein L18/L18-A/B/e, conserved site / Ribosomal protein L18e signature. / Ribosomal protein L23/L25, N-terminal / :
類似検索 - ドメイン・相同性
Agelastatin A / osmium (III) hexammine / : / : / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / : ...Agelastatin A / osmium (III) hexammine / : / : / : / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / : / Small ribosomal subunit protein uS4A / Large ribosomal subunit protein uL15 / Small ribosomal subunit protein eS17A / Large ribosomal subunit protein eL24A / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein eL39 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL30A / Large ribosomal subunit protein uL6A / Large ribosomal subunit protein uL22A / Large ribosomal subunit protein uL24A / Large ribosomal subunit protein eL33A / Large ribosomal subunit protein eL36A / Large ribosomal subunit protein eL29 / Large ribosomal subunit protein eL15A / Large ribosomal subunit protein eL22A / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS15 / Ubiquitin-ribosomal protein eS31 fusion protein / Small ribosomal subunit protein eS19A / Small ribosomal subunit protein eS21A / Small ribosomal subunit protein uS8A / Large ribosomal subunit protein eL27A / Large ribosomal subunit protein eL31A / Ubiquitin-ribosomal protein eL40A fusion protein / Large ribosomal subunit protein eL20A / Large ribosomal subunit protein eL43A / Large ribosomal subunit protein eL42A / Small ribosomal subunit protein uS12A / Small ribosomal subunit protein eS24A / Small ribosomal subunit protein eS30A / Small ribosomal subunit protein eS4A / Small ribosomal subunit protein eS6A / Small ribosomal subunit protein eS8A / Large ribosomal subunit protein uL14A / Large ribosomal subunit protein uL2A / Small ribosomal subunit protein uS17A / Large ribosomal subunit protein eL18A / Small ribosomal subunit protein uS9A / Small ribosomal subunit protein uS13A / Large ribosomal subunit protein eL19A / Large ribosomal subunit protein uL29A / Small ribosomal subunit protein eS32A / Small ribosomal subunit protein eS32B / Large ribosomal subunit protein uL4A / Putative major capsid protein p72 / Large ribosomal subunit protein uL3 / Small ribosomal subunit protein eS17B / Large ribosomal subunit protein eL8A / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL13A / Small ribosomal subunit protein eS7A / Small ribosomal subunit protein uS2A / Small ribosomal subunit protein eS1A / Small ribosomal subunit protein eS27A / Large ribosomal subunit protein eL14A / Small ribosomal subunit protein RACK1 / Large ribosomal subunit protein eL32 / Small ribosomal subunit protein uS10 / Suppressor protein STM1 / Small ribosomal subunit protein uS11B / Small ribosomal subunit protein eS26B / Small ribosomal subunit protein uS14A / Large ribosomal subunit protein uL16 / Small ribosomal subunit protein eS12 / Large ribosomal subunit protein eL37A / Large ribosomal subunit protein eL38 / Large ribosomal subunit protein eL34A / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein eL6A / Large ribosomal subunit protein eL21A / Small ribosomal subunit protein eS10A / LPS-assembly protein LptD / Large ribosomal subunit protein uL5B / Small ribosomal subunit protein eS25A / Small ribosomal subunit protein eS28A
類似検索 - 構成要素
生物種Saccharomyces cerevisiae (パン酵母)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 3.5 Å
データ登録者McClary, B. / Zinshteyn, B. / Meyer, M. / Jouanneau, M. / Pellegrino, S. / Yusupova, G. / Schuller, A. / Reyes, J.C.P. / Lu, J. / Luo, C. ...McClary, B. / Zinshteyn, B. / Meyer, M. / Jouanneau, M. / Pellegrino, S. / Yusupova, G. / Schuller, A. / Reyes, J.C.P. / Lu, J. / Luo, C. / Dang, Y. / Romo, D. / Yusupov, M. / Green, R. / Liu, J.O.
資金援助 米国, フランス, 2件
組織認可番号国
National Institutes of HealthR37 GM052964 米国
European Research Council294312 フランス
引用ジャーナル: Cell Chem Biol / 年: 2017
タイトル: Inhibition of Eukaryotic Translation by the Antitumor Natural Product Agelastatin A.
著者: McClary, B. / Zinshteyn, B. / Meyer, M. / Jouanneau, M. / Pellegrino, S. / Yusupova, G. / Schuller, A. / Reyes, J.C.P. / Lu, J. / Guo, Z. / Ayinde, S. / Luo, C. / Dang, Y. / Romo, D. / ...著者: McClary, B. / Zinshteyn, B. / Meyer, M. / Jouanneau, M. / Pellegrino, S. / Yusupova, G. / Schuller, A. / Reyes, J.C.P. / Lu, J. / Guo, Z. / Ayinde, S. / Luo, C. / Dang, Y. / Romo, D. / Yusupov, M. / Green, R. / Liu, J.O.
履歴
登録2016年11月15日登録サイト: PDBE / 処理サイト: PDBE
改定 1.02017年6月28日Provider: repository / タイプ: Initial release
改定 1.12017年7月5日Group: Structure summary / カテゴリ: struct / Item: _struct.title
改定 1.22018年1月31日Group: Author supporting evidence / カテゴリ: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
改定 1.32024年1月17日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
1: 25S ribosomal RNA
3: 5S ribosomal RNA
4: 5.8S ribosomal RNA
j: 60S ribosomal protein L2-A
k: 60S ribosomal protein L3
l: 60S ribosomal protein L4-A
m: 60S ribosomal protein L5
n: 60S ribosomal protein L6-A
o: 60S ribosomal protein L7-A
p: 60S ribosomal protein L8-A
q: 60S ribosomal protein L9-A
r: 60S ribosomal protein L10
s: 60S ribosomal protein L11-B
t: 60S ribosomal protein L13-A
u: 60S ribosomal protein L14-A
v: 60S ribosomal protein L15-A
w: 60S ribosomal protein L16-A
x: 60S ribosomal protein L17-A
y: 60S ribosomal protein L18-A
z: 60S ribosomal protein L19-A
0: 60S ribosomal protein L20-A
2: 60S ribosomal protein L21-A
5: 60S ribosomal protein L22-A
l2: 60S ribosomal protein L23-A
6: 18S ribosomal RNA
7: 60S ribosomal protein L24-A
8: 60S ribosomal protein L25
9: 60S ribosomal protein L26-A
AA: 60S ribosomal protein L27-A
AB: 60S ribosomal protein L28
AC: 60S ribosomal protein L29
AD: 60S ribosomal protein L30
AE: 60S ribosomal protein L31-A
AF: 60S ribosomal protein L32
AG: 60S ribosomal protein L33-A
AH: 60S ribosomal protein L34-A
AI: 60S ribosomal protein L35-A
AJ: 60S ribosomal protein L36-A
AK: 60S ribosomal protein L37-A
AL: 60S ribosomal protein L38
AM: 60S ribosomal protein L39
AN: Ubiquitin-60S ribosomal protein L40
AO: 60S ribosomal protein L41-B
AP: 60S ribosomal protein L42-A
AQ: 60S ribosomal protein L43-A
i: Suppressor protein STM1
AR: 25S ribosomal RNA
AS: 5S ribosomal RNA
AT: 5.8S ribosomal RNA
CD: 60S ribosomal protein L2-A
CE: 60S ribosomal protein L3
CF: 60S ribosomal protein L4-A
CG: 60S ribosomal protein L5
CH: 60S ribosomal protein L6-A
CI: 60S ribosomal protein L7-A
CJ: 60S ribosomal protein L8-A
CK: 60S ribosomal protein L9-A
CL: 60S ribosomal protein L10
CM: 60S ribosomal protein L11-B
CN: 60S ribosomal protein L13-A
CO: 60S ribosomal protein L14-A
CP: 60S ribosomal protein L15-A
CQ: 60S ribosomal protein L16-A
CR: 60S ribosomal protein L17-A
CS: 60S ribosomal protein L18-A
CT: 60S ribosomal protein L19-A
CU: 60S ribosomal protein L20-A
CV: 60S ribosomal protein L21-A
CW: 60S ribosomal protein L22-A
CX: 60S ribosomal protein L23-A
CY: 60S ribosomal protein L24-A
CZ: 60S ribosomal protein L25
DA: 60S ribosomal protein L26-A
DB: 60S ribosomal protein L27-A
DC: 60S ribosomal protein L28
DD: 60S ribosomal protein L29
DE: 60S ribosomal protein L30
DF: 60S ribosomal protein L31-A
DG: 60S ribosomal protein L32
DH: 60S ribosomal protein L33-A
DI: 60S ribosomal protein L34-A
DJ: 60S ribosomal protein L35-A
DK: 60S ribosomal protein L36-A
DL: 60S ribosomal protein L37-A
DM: 60S ribosomal protein L38
DN: 60S ribosomal protein L39
DO: Ubiquitin-60S ribosomal protein L40
DP: 60S ribosomal protein L41-B
DQ: 60S ribosomal protein L42-A
DR: 60S ribosomal protein L43-A
p0: 60S acidic ribosomal protein P0
sM: Suppressor protein STM1,Suppressor protein STM1,Suppressor protein Stm1 - Mol B
A: 18S ribosomal RNA
B: 40S ribosomal protein S0-A
C: 40S ribosomal protein S1-A
D: 40S ribosomal protein S2
E: 40S ribosomal protein S3
F: 40S ribosomal protein S4-A
G: 40S ribosomal protein S5
H: 40S ribosomal protein S6-A
I: 40S ribosomal protein S7-A
J: 40S ribosomal protein S8-A
K: 40S ribosomal protein S9-A
L: 40S ribosomal protein S10-A
M: 40S ribosomal protein S11-A
N: 40S ribosomal protein S12
O: 40S ribosomal protein S13
P: 40S ribosomal protein S14-B
Q: 40S ribosomal protein S15
R: 40S ribosomal protein S16-A
S: 40S ribosomal protein S17-B
T: 40S ribosomal protein S18-A
U: 40S ribosomal protein S19-A
V: 40S ribosomal protein S20
W: 40S ribosomal protein S21-A
X: 40S ribosomal protein S22-A
Y: 40S ribosomal protein S23-A
Z: 40S ribosomal protein S24-A
a: 40S ribosomal protein S25-A
b: 40S ribosomal protein S26-B
c: 40S ribosomal protein S27-A
d: 40S ribosomal protein S28-A
e: 40S ribosomal protein S29-A
f: 40S ribosomal protein S30-A
g: Ubiquitin-40S ribosomal protein S31
h: Guanine nucleotide-binding protein subunit beta-like protein
s0: 40S ribosomal protein S0-A
s1: 40S ribosomal protein S1-A
s2: 40S ribosomal protein S2
s3: 40S ribosomal protein S3
s4: 40S ribosomal protein S4-A
s5: 40S ribosomal protein S5
s6: 40S ribosomal protein S6-A
s7: 40S ribosomal protein S7-A
s8: 40S ribosomal protein S8-A
s9: 40S ribosomal protein S9-A
c0: 40S ribosomal protein S10-A
c1: 40S ribosomal protein S11-A
c2: 40S ribosomal protein S12
c3: 40S ribosomal protein S13
c4: 40S ribosomal protein S14-B
c5: 40S ribosomal protein S15
c6: 40S ribosomal protein S16-A
c7: 40S ribosomal protein S17-A
c8: 40S ribosomal protein S18-A
c9: 40S ribosomal protein S19-A
d0: 40S ribosomal protein S20
d1: 40S ribosomal protein S21-A
d2: 40S ribosomal protein S22-A
d3: 40S ribosomal protein S23-A
d4: 40S ribosomal protein S24-A
d5: 40S ribosomal protein S25-A
d6: 40S ribosomal protein S26-B
d7: 40S ribosomal protein S27-A
d8: 40S ribosomal protein S28-A
d9: 40S ribosomal protein S29-A
e0: 40S ribosomal protein S30-A
e1: Ubiquitin-40S ribosomal protein S31
sR: Guanine nucleotide-binding protein subunit beta-like protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)6,450,1602653
ポリマ－6,107,848159
非ポリマー342,3122494
水00
1
1: 25S ribosomal RNA
3: 5S ribosomal RNA
4: 5.8S ribosomal RNA
j: 60S ribosomal protein L2-A
k: 60S ribosomal protein L3
l: 60S ribosomal protein L4-A
m: 60S ribosomal protein L5
n: 60S ribosomal protein L6-A
o: 60S ribosomal protein L7-A
p: 60S ribosomal protein L8-A
q: 60S ribosomal protein L9-A
r: 60S ribosomal protein L10
s: 60S ribosomal protein L11-B
t: 60S ribosomal protein L13-A
u: 60S ribosomal protein L14-A
v: 60S ribosomal protein L15-A
w: 60S ribosomal protein L16-A
x: 60S ribosomal protein L17-A
y: 60S ribosomal protein L18-A
z: 60S ribosomal protein L19-A
0: 60S ribosomal protein L20-A
2: 60S ribosomal protein L21-A
5: 60S ribosomal protein L22-A
l2: 60S ribosomal protein L23-A
7: 60S ribosomal protein L24-A
8: 60S ribosomal protein L25
9: 60S ribosomal protein L26-A
AA: 60S ribosomal protein L27-A
AB: 60S ribosomal protein L28
AC: 60S ribosomal protein L29
AD: 60S ribosomal protein L30
AE: 60S ribosomal protein L31-A
AF: 60S ribosomal protein L32
AG: 60S ribosomal protein L33-A
AH: 60S ribosomal protein L34-A
AI: 60S ribosomal protein L35-A
AJ: 60S ribosomal protein L36-A
AK: 60S ribosomal protein L37-A
AL: 60S ribosomal protein L38
AM: 60S ribosomal protein L39
AN: Ubiquitin-60S ribosomal protein L40
AO: 60S ribosomal protein L41-B
AP: 60S ribosomal protein L42-A
AQ: 60S ribosomal protein L43-A
i: Suppressor protein STM1
A: 18S ribosomal RNA
B: 40S ribosomal protein S0-A
C: 40S ribosomal protein S1-A
D: 40S ribosomal protein S2
E: 40S ribosomal protein S3
F: 40S ribosomal protein S4-A
G: 40S ribosomal protein S5
H: 40S ribosomal protein S6-A
I: 40S ribosomal protein S7-A
J: 40S ribosomal protein S8-A
K: 40S ribosomal protein S9-A
L: 40S ribosomal protein S10-A
M: 40S ribosomal protein S11-A
N: 40S ribosomal protein S12
O: 40S ribosomal protein S13
P: 40S ribosomal protein S14-B
Q: 40S ribosomal protein S15
R: 40S ribosomal protein S16-A
S: 40S ribosomal protein S17-B
T: 40S ribosomal protein S18-A
U: 40S ribosomal protein S19-A
V: 40S ribosomal protein S20
W: 40S ribosomal protein S21-A
X: 40S ribosomal protein S22-A
Y: 40S ribosomal protein S23-A
Z: 40S ribosomal protein S24-A
a: 40S ribosomal protein S25-A
b: 40S ribosomal protein S26-B
c: 40S ribosomal protein S27-A
d: 40S ribosomal protein S28-A
e: 40S ribosomal protein S29-A
f: 40S ribosomal protein S30-A
g: Ubiquitin-40S ribosomal protein S31
h: Guanine nucleotide-binding protein subunit beta-like protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)3,212,4941278
ポリマ－3,047,22179
非ポリマー165,2721199
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
2
6: 18S ribosomal RNA
AR: 25S ribosomal RNA
AS: 5S ribosomal RNA
AT: 5.8S ribosomal RNA
CD: 60S ribosomal protein L2-A
CE: 60S ribosomal protein L3
CF: 60S ribosomal protein L4-A
CG: 60S ribosomal protein L5
CH: 60S ribosomal protein L6-A
CI: 60S ribosomal protein L7-A
CJ: 60S ribosomal protein L8-A
CK: 60S ribosomal protein L9-A
CL: 60S ribosomal protein L10
CM: 60S ribosomal protein L11-B
CN: 60S ribosomal protein L13-A
CO: 60S ribosomal protein L14-A
CP: 60S ribosomal protein L15-A
CQ: 60S ribosomal protein L16-A
CR: 60S ribosomal protein L17-A
CS: 60S ribosomal protein L18-A
CT: 60S ribosomal protein L19-A
CU: 60S ribosomal protein L20-A
CV: 60S ribosomal protein L21-A
CW: 60S ribosomal protein L22-A
CX: 60S ribosomal protein L23-A
CY: 60S ribosomal protein L24-A
CZ: 60S ribosomal protein L25
DA: 60S ribosomal protein L26-A
DB: 60S ribosomal protein L27-A
DC: 60S ribosomal protein L28
DD: 60S ribosomal protein L29
DE: 60S ribosomal protein L30
DF: 60S ribosomal protein L31-A
DG: 60S ribosomal protein L32
DH: 60S ribosomal protein L33-A
DI: 60S ribosomal protein L34-A
DJ: 60S ribosomal protein L35-A
DK: 60S ribosomal protein L36-A
DL: 60S ribosomal protein L37-A
DM: 60S ribosomal protein L38
DN: 60S ribosomal protein L39
DO: Ubiquitin-60S ribosomal protein L40
DP: 60S ribosomal protein L41-B
DQ: 60S ribosomal protein L42-A
DR: 60S ribosomal protein L43-A
p0: 60S acidic ribosomal protein P0
sM: Suppressor protein STM1,Suppressor protein STM1,Suppressor protein Stm1 - Mol B
s0: 40S ribosomal protein S0-A
s1: 40S ribosomal protein S1-A
s2: 40S ribosomal protein S2
s3: 40S ribosomal protein S3
s4: 40S ribosomal protein S4-A
s5: 40S ribosomal protein S5
s6: 40S ribosomal protein S6-A
s7: 40S ribosomal protein S7-A
s8: 40S ribosomal protein S8-A
s9: 40S ribosomal protein S9-A
c0: 40S ribosomal protein S10-A
c1: 40S ribosomal protein S11-A
c2: 40S ribosomal protein S12
c3: 40S ribosomal protein S13
c4: 40S ribosomal protein S14-B
c5: 40S ribosomal protein S15
c6: 40S ribosomal protein S16-A
c7: 40S ribosomal protein S17-A
c8: 40S ribosomal protein S18-A
c9: 40S ribosomal protein S19-A
d0: 40S ribosomal protein S20
d1: 40S ribosomal protein S21-A
d2: 40S ribosomal protein S22-A
d3: 40S ribosomal protein S23-A
d4: 40S ribosomal protein S24-A
d5: 40S ribosomal protein S25-A
d6: 40S ribosomal protein S26-B
d7: 40S ribosomal protein S27-A
d8: 40S ribosomal protein S28-A
d9: 40S ribosomal protein S29-A
e0: 40S ribosomal protein S30-A
e1: Ubiquitin-40S ribosomal protein S31
sR: Guanine nucleotide-binding protein subunit beta-like protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)3,237,6661375
ポリマ－3,060,62780
非ポリマー177,0401295
水0
タイプ名称対称操作数
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)304.080, 286.550, 436.550
Angle α, β, γ (deg.)90.000, 99.050, 90.000
Int Tables number4
Space group name H-MP1211

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要素

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RNA鎖 , 4種, 8分子 1AR3AS4AT6A

#1: RNA鎖 25S ribosomal RNA


分子量: 1097493.875 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: REF: 831416132
#2: RNA鎖 5S ribosomal RNA


分子量: 38951.105 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: GenBank: 1039024062
#3: RNA鎖 5.8S ribosomal RNA


分子量: 50682.922 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: GenBank: 1102645687
#25: RNA鎖 18S ribosomal RNA


分子量: 579761.938 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: GenBank: 874346701

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60S ribosomal protein ... , 40種, 80分子 jCDkCElCFmCGnCHoCIpCJqCKrCLsCMtCNuCOvCPwCQxCR...

#4: タンパク質 60S ribosomal protein L2-A / L5 / RP8 / YL6


分子量: 27217.289 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL2A, RPL5B, YFR031C-A, YFR031BC / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX45
#5: タンパク質 60S ribosomal protein L3 / Maintenance of killer protein 8 / RP1 / Trichodermin resistance protein / YL1


分子量: 43719.602 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL3, MAK8, TCM1, YOR063W, YOR29-14 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P14126
#6: タンパク質 60S ribosomal protein L4-A / L2 / RP2 / YL2


分子量: 39027.926 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL4A, RPL2, RPL2A, YBR031W, YBR0315 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P10664
#7: タンパク質 60S ribosomal protein L5 / L1 / L1a / Ribosomal 5S RNA-binding protein / YL3


分子量: 33633.633 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL5, RPL1, RPL1A, YPL131W, LPI14W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P26321
#8: タンパク質 60S ribosomal protein L6-A / L17 / RP18 / YL16


分子量: 19869.369 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL6A, RPL17A, YL16A, YML073C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: Q02326
#9: タンパク質 60S ribosomal protein L7-A / L6 / RP11 / YL8


分子量: 25240.377 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL7A, RPL6A, RPL8A, YL8A, YGL076C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05737
#10: タンパク質 60S ribosomal protein L8-A / L4 / L4-2 / L7a-1 / Maintenance of killer protein 7 / RP6 / YL5


分子量: 25814.998 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL8A, MAK7, RPL4A, YHL033C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P17076
#11: タンパク質 60S ribosomal protein L9-A / L8 / RP24 / YL11


分子量: 21605.061 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL9A, RPL8A, RPL9, YGL147C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05738
#12: タンパク質 60S ribosomal protein L10 / L9 / Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein


分子量: 25279.271 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL10, GRC5, QSR1, YLR075W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P41805
#13: タンパク質 60S ribosomal protein L11-B / L16 / RP39 / YL22


分子量: 19266.082 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL11B, RP39B, RPL16B, YGR085C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: Q3E757
#14: タンパク質 60S ribosomal protein L13-A


分子量: 21885.234 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL13A, YDL082W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: Q12690
#15: タンパク質 60S ribosomal protein L14-A


分子量: 14976.794 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL14A, YKL006W, YKL153 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P36105
#16: タンパク質 60S ribosomal protein L15-A / L13 / RP15R / YL10 / YP18


分子量: 24351.162 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL15A, RPL10A, RPL13A, YL10A, YLR029C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05748
#17: タンパク質 60S ribosomal protein L16-A / L13a / L21 / RP22 / YL15


分子量: 22028.951 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL16A, RPL13, RPL21A, YIL133C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P26784
#18: タンパク質 60S ribosomal protein L17-A / L20A / YL17


分子量: 20458.322 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL17A, RPL17, RPL20A, YKL180W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05740
#19: タンパク質 60S ribosomal protein L18-A / RP28


分子量: 20478.059 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL18A, RP28A, YOL120C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX49
#20: タンパク質 60S ribosomal protein L19-A / L23 / RP15L / RP33 / YL14


分子量: 21631.121 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL19A, RPL23A, YL14A, YBR084C-A, YBR084BC / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX82
#21: タンパク質 60S ribosomal protein L20-A / L18a


分子量: 20478.852 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL20A, RPL18A, RPL18A2, YMR242C, YM9408.04C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX23
#22: タンパク質 60S ribosomal protein L21-A


分子量: 18148.066 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL21A, URP1, YBR191W, YBR1401 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: Q02753
#23: タンパク質 60S ribosomal protein L22-A / L1c / RP4 / YL31


分子量: 11263.863 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL22A, YLR061W, L2168 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05749
#24: タンパク質 60S ribosomal protein L23-A / L17a / YL32


分子量: 14362.755 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL23A, RPL17A, RPL17AA, YBL087C, YBL0713 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX41
#26: タンパク質 60S ribosomal protein L24-A / L30 / RP29 / YL21


分子量: 11369.424 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL24A, RP29, RPL30A, YGL031C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P04449
#27: タンパク質 60S ribosomal protein L25 / RP16L / YL25 / YP42'


分子量: 13771.176 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL25, YOL127W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P04456
#28: タンパク質 60S ribosomal protein L26-A / L33 / YL33


分子量: 14134.588 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL26A, RPL26, RPL33A, YLR344W, L8300.4 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05743
#29: タンパク質 60S ribosomal protein L27-A


分子量: 15437.166 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL27A, RPL27, YHR010W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0C2H6
#30: タンパク質 60S ribosomal protein L28 / L27a / L29 / RP44 / RP62 / YL24


分子量: 16630.471 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL28, CYH2, YGL103W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P02406
#31: タンパク質 60S ribosomal protein L29 / YL43


分子量: 6560.688 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL29, YL43, YFR032C-A, YFR032BW / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05747
#32: タンパク質 60S ribosomal protein L30 / L32 / RP73 / YL38


分子量: 10558.344 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL30, RPL32, YGL030W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P14120
#33: タンパク質 60S ribosomal protein L31-A / L34 / YL28


分子量: 12649.754 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL31A, RPL34, RPL34A, YDL075W, D2478 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0C2H8
#34: タンパク質 60S ribosomal protein L32


分子量: 14478.054 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL32, YBL092W, YBL0838 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P38061
#35: タンパク質 60S ribosomal protein L33-A / L37 / RP47 / YL37


分子量: 12045.935 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL33A, RPL37A, YPL143W, LPI4W, P2625 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05744
#36: タンパク質 60S ribosomal protein L34-A


分子量: 12608.831 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL34A, YER056C-A, YER056BC / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P87262
#37: タンパク質 60S ribosomal protein L35-A


分子量: 13811.444 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL35A, SOS1, YDL191W, D1249 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX84
#38: タンパク質 60S ribosomal protein L36-A / L39 / YL39


分子量: 11020.063 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL36A, RPL39A, YMR194W, YM9646.06 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05745
#39: タンパク質 60S ribosomal protein L37-A / L43 / YL35 / YP55


分子量: 9746.199 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL37A, RPL35A, YLR185W, L9470.6 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P49166
#40: タンパク質 60S ribosomal protein L38


分子量: 8714.363 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL38, YLR325C, L8543.2 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P49167
#41: タンパク質・ペプチド 60S ribosomal protein L39 / L46 / YL40


分子量: 6227.444 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL39, RPL46, SPB2, YJL189W, J0360 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P04650
#43: タンパク質・ペプチド 60S ribosomal protein L41-B / L47 / YL41


分子量: 3354.243 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL41B, RPL47B, YL41B, YDL133C-A, YDL133BC / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX87, UniProt: P0CX86*PLUS
#44: タンパク質 60S ribosomal protein L42-A / L41 / YL27 / YP44


分子量: 12115.462 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL42A, RPL41A, SCL41A, YNL162W, N1722 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX27
#45: タンパク質 60S ribosomal protein L43-A / L37a / YL35


分子量: 9981.756 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL43A, YPR043W, YP9499.02 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX25

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タンパク質 , 3種, 5分子 ANDOp0hsR

#42: タンパク質 Ubiquitin-60S ribosomal protein L40


分子量: 6032.321 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPL40A, UBI1, YIL148W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CH08
#47: タンパク質 60S acidic ribosomal protein P0 / A0 / L10E


分子量: 24101.676 Da / 分子数: 1 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPP0, L10E, RPA0, RPL10E, RPLA0, YLR340W, L8300.8
発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05317
#81: タンパク質 Guanine nucleotide-binding protein subunit beta-like protein / Receptor for activated C kinase / Receptor of activated protein kinase C 1 / RACK1


分子量: 34710.023 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: ASC1, CPC2, YMR116C, YM9718.15C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P38011

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Suppressor protein ... , 2種, 2分子 isM

#46: タンパク質 Suppressor protein STM1 / 3BP1 / GU4 nucleic-binding protein 2 / G4p2 protein / POP2 multicopy suppressor protein 4 / ...3BP1 / GU4 nucleic-binding protein 2 / G4p2 protein / POP2 multicopy suppressor protein 4 / Ribosomal subunits association factor / AF / TOM1 suppressor protein 1 / Triplex-binding protein 1


分子量: 18224.963 Da / 分子数: 1 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: STM1, MPT4, STO1, YLR150W, L9634.1 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P39015
#48: タンパク質 Suppressor protein STM1,Suppressor protein STM1,Suppressor protein Stm1 - Mol B / 3BP1 / GU4 nucleic-binding protein 2 / G4p2 protein / POP2 multicopy suppressor protein 4 / ...3BP1 / GU4 nucleic-binding protein 2 / G4p2 protein / POP2 multicopy suppressor protein 4 / Ribosomal subunits association factor / AF / TOM1 suppressor protein 1 / Triplex-binding protein 1


分子量: 10296.888 Da / 分子数: 1 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: STM1, MPT4, STO1, YLR150W, L9634.1 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P39015

+
40S ribosomal protein ... , 32種, 62分子 Bs0Cs1Ds2Es3Fs4Gs5Hs6Is7Js8Ks9Lc0Mc1Nc2Oc3Pc4...

#49: タンパク質 40S ribosomal protein S0-A / Nucleic acid-binding protein NAB1A


分子量: 22811.074 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS0A, NAB1, NAB1A, YST1, YGR214W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P32905
#50: タンパク質 40S ribosomal protein S1-A / RP10A


分子量: 24498.365 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS1A, PLC1, RPS10A, YLR441C, L9753.9 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P33442
#51: タンパク質 40S ribosomal protein S2 / Omnipotent suppressor protein SUP44 / RP12 / S4 / YS5


分子量: 23212.979 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS2, RPS4, SUP38, SUP44, YGL123W, G2893 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P25443
#52: タンパク質 40S ribosomal protein S3 / RP13 / YS3


分子量: 24702.791 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS3, SUF14, YNL178W, N1653 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05750
#53: タンパク質 40S ribosomal protein S4-A / RP5 / S7 / YS6


分子量: 29338.133 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS4A, RPS7B, YJR145C, J2186 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX35
#54: タンパク質 40S ribosomal protein S5 / RP14 / S2 / YS8


分子量: 22908.338 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS5, RPS2, YJR123W, J2045 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P26783
#55: タンパク質 40S ribosomal protein S6-A / RP9 / S10 / YS4


分子量: 25895.072 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS6A, RPS101, RPS10B, YPL090C, LPG18C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX37
#56: タンパク質 40S ribosomal protein S7-A / RP30 / RP40


分子量: 21158.648 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS7A, RPS30, YOR096W, YOR3177W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P26786
#57: タンパク質 40S ribosomal protein S8-A / RP19 / S14 / YS9


分子量: 22406.609 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS8A, RPS14A, YBL072C, YBL06.05, YBL0613 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX39
#58: タンパク質 40S ribosomal protein S9-A / RP21 / S13 / YP28 / YS11


分子量: 21210.662 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS9A, RPS13A, YS11A, YPL081W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: O13516
#59: タンパク質 40S ribosomal protein S10-A


分子量: 12757.445 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS10A, YOR293W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: Q08745
#60: タンパク質 40S ribosomal protein S11-A / RP41 / S18 / YS12


分子量: 17654.738 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS11A, RPS18A, YDR025W, YD9813.03 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX47
#61: タンパク質 40S ribosomal protein S12


分子量: 13327.331 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS12, YOR369C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P48589
#62: タンパク質 40S ribosomal protein S13 / S27a / YS15


分子量: 16928.748 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS13, RPS13C, YDR064W, D4252, YD9609.18 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05756
#63: タンパク質 40S ribosomal protein S14-B / RP59B


分子量: 13560.528 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS14B, CRY2, YJL191W, J0354 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P39516
#64: タンパク質 40S ribosomal protein S15 / RIG protein / RP52 / S21 / YS21


分子量: 15900.712 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS15, RPS21, YOL040C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: Q01855
#65: タンパク質 40S ribosomal protein S16-A / RP61R


分子量: 15746.292 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS16A, RP61R, YMR143W, YM9375.12 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX51
#66: タンパク質 40S ribosomal protein S17-B / RP51B


分子量: 14268.545 Da / 分子数: 1 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS17B, RP51B, YDR447C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P14127
#67: タンパク質 40S ribosomal protein S18-A


分子量: 16940.443 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS18A, YDR450W, D9461.35 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX55
#68: タンパク質 40S ribosomal protein S19-A / RP55A / S16a / YP45 / YS16A


分子量: 15810.930 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS19A, RP55A, RPS16AA, YOL121C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P07280
#69: タンパク質 40S ribosomal protein S20


分子量: 12575.547 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS20, URP2, YHL015W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P38701
#70: タンパク質 40S ribosomal protein S21-A / S26 / YS25


分子量: 9758.829 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS21A, RPS25, RPS25A, RPS26A, YKR057W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0C0V8
#71: タンパク質 40S ribosomal protein S22-A / RP50 / S24 / YP58 / YS22


分子量: 14518.867 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS22A, RPS24, RPS24A, YJL190C, J0355 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0C0W1
#72: タンパク質 40S ribosomal protein S23-A / RP37 / S28 / YS14


分子量: 15942.699 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS23A, RPS28A, YGR118W, G6178 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX29
#73: タンパク質 40S ribosomal protein S24-A / RP50


分子量: 15231.650 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS24A, RPS24EA, YER074W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX31
#74: タンパク質 40S ribosomal protein S25-A / RP45 / S31 / YS23


分子量: 8001.377 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS25A, RPS31A, YGR027C / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: Q3E792
#75: タンパク質 40S ribosomal protein S26-B


分子量: 11022.989 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS26B, YER131W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P39939
#76: タンパク質 40S ribosomal protein S27-A / RP61 / YS20


分子量: 8762.195 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS27A, YKL156W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P35997
#77: タンパク質 40S ribosomal protein S28-A / S33 / YS27


分子量: 7116.281 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS28A, RPS33, RPS33A, YOR167C, O3600 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: Q3E7X9
#78: タンパク質 40S ribosomal protein S29-A / S36 / YS29


分子量: 6335.303 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS29A, RPS36A, YS29A, YLR388W, L8084.11 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P41057
#79: タンパク質 40S ribosomal protein S30-A


分子量: 7006.346 Da / 分子数: 2 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS30A, YLR287C-A, L8003.23, YLR287BC / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P0CX33
#82: タンパク質 40S ribosomal protein S17-A / RP51A


分子量: 13897.153 Da / 分子数: 1 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS17A, RP51A, YML024W / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P02407

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Ubiquitin-40S ribosomal protein ... , 2種, 2分子 ge1

#80: タンパク質 Ubiquitin-40S ribosomal protein S31


分子量: 8101.675 Da / 分子数: 1 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS31, RPS37, UBI3, YLR167W, L9470.14 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05759
#83: タンパク質 Ubiquitin-40S ribosomal protein S31


分子量: 5704.610 Da / 分子数: 1 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (パン酵母)
遺伝子: RPS31, RPS37, UBI3, YLR167W, L9470.14 / 発現宿主: Saccharomyces cerevisiae (パン酵母) / 参照: UniProt: P05759

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非ポリマー , 4種, 2494分子

#84: 化合物...
ChemComp-OHX / osmium (III) hexammine / osmium(6+) hexaazanide


分子量: 286.365 Da / 分子数: 1070 / 由来タイプ: 合成 / 式: H12N6Os
#85: 化合物...
ChemComp-MG / MAGNESIUM ION / マグネシウムジカチオン


分子量: 24.305 Da / 分子数: 1406 / 由来タイプ: 合成 / 式: Mg
#86: 化合物 ChemComp-7MB / Agelastatin A / アゲラスタチンA


分子量: 341.161 Da / 分子数: 2 / 由来タイプ: 合成 / 式: C12H13BrN4O3
#87: 化合物
ChemComp-ZN / ZINC ION


分子量: 65.409 Da / 分子数: 16 / 由来タイプ: 合成 / 式: Zn

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 3.18 Å3/Da / 溶媒含有率: 61.3 %
結晶化温度: 277 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 7
詳細: PEG 20K, KSCN, Mg Acetate, Tris-Acetate, Glycerol, Spermidine

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データ収集

回折
ID平均測定温度 (K)Crystal-ID
11001
21
放射光源
由来サイトビームラインID波長 (Å)
シンクロトロンSOLEIL PROXIMA 111.148
シンクロトロンSLS X06SA21
検出器
タイプID検出器日付
DECTRIS PILATUS 6M1PIXEL2016年3月12日
DECTRIS EIGER X 16M2PIXEL2016年6月12日
放射
IDプロトコル単色(M)・ラウエ(L)散乱光タイプWavelength-ID
1SINGLE WAVELENGTHMx-ray1
2SINGLE WAVELENGTHMx-ray2
放射波長
ID波長 (Å)相対比
11.1481
211
反射解像度: 3.5→98.383 Å / Num. obs: 925728 / % possible obs: 100 % / Observed criterion σ(I): -3 / 冗長度: 10.553 % / Biso Wilson estimate: 71.28 Å2 / CC1/2: 0.985 / Rmerge(I) obs: 0.567 / Rrim(I) all: 0.597 / Χ2: 0.898 / Net I/σ(I): 5.56 / Num. measured all: 9768849 / Scaling rejects: 1016
反射 シェル

Diffraction-ID: 1

解像度 (Å)冗長度 (%)Rmerge(I) obsMean I/σ(I) obsNum. measured obsNum. possibleNum. unique obsCC1/2Rrim(I) all% possible all
3.5-3.67.4242.259155510474868747720.3222.42599.9
3.6-3.77.4161.8211.2549614566935669020.4191.956100
3.7-3.87.5611.4511.5845509160205601890.531.557100
3.8-3.99.4911.4941.9351310654065540630.6171.579100
3.9-49.541.2882.2446535648796487790.6871.361100
4-4.59.4140.8923.2317348651843291842950.8120.944100
4.5-59.4540.5684.9611151791179691179580.9130.601100
5-7.512.6240.5277.8128243952237532237270.9630.548100
7.5-1017.3310.32714.5594848354735547270.9910.337100
10-1516.5230.1720.8746707928273282690.9960.175100
15-2016.370.12324.96113279692269200.9970.127100
20-2516.4320.08632.5241145250525040.9990.089100
25-3016.2680.06739.8918057111011100.9990.07100
30-4016.3630.06345.24145478908890.9990.06599.9
40-5015.1210.06348.3248693223220.9990.065100
50-757.3090.03142.2617982462460.9990.034100
75-1006.2680.03344.14351615610.03791.8
98.383-10049

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解析

ソフトウェア
名称バージョン分類
PHENIX精密化
XSCALEデータスケーリング
PDB_EXTRACT3.2データ抽出
PHASER位相決定
XDSデータ削減
精密化構造決定の手法: 分子置換
開始モデル: 4V88

4v88


解像度: 3.5→98.383 Å / SU ML: 0.43 / 交差検証法: FREE R-VALUE / σ(F): 1.35 / 位相誤差: 22.29 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.239 18297 1.98 %
Rwork0.1953 907348 -
obs0.1962 925645 99.97 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 320.72 Å2 / Biso mean: 79.7288 Å2 / Biso min: 0 Å2
精密化ステップサイクル: final / 解像度: 3.5→98.383 Å
タンパク質核酸リガンド溶媒全体
原子数178134 222512 8952 0 409598
Biso mean--149.26 --
残基数----33045
拘束条件
Refine-IDタイプDev ideal数
X-RAY DIFFRACTIONf_bond_d0.007436643
X-RAY DIFFRACTIONf_angle_d1.13647761
X-RAY DIFFRACTIONf_chiral_restr0.04679231
X-RAY DIFFRACTIONf_plane_restr0.00641536
X-RAY DIFFRACTIONf_dihedral_angle_d16.915194591
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 30 / % reflection obs: 100 %

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all
3.5-3.53980.33526020.30883021930821
3.5398-3.58140.33496420.29863013530777
3.5814-3.62510.32966150.29153011930734
3.6251-3.6710.29586380.27223009630734
3.671-3.71930.2965710.26033018230753
3.7193-3.77020.27245990.24443020930808
3.7702-3.82410.28716170.24123007630693
3.8241-3.88120.26746440.23083016130805
3.8812-3.94180.26255730.21963024030813
3.9418-4.00650.27715790.22293022330802
4.0065-4.07560.26176260.20463011130737
4.0756-4.14970.22915870.19743020730794
4.1497-4.22950.23585980.19283026330861
4.2295-4.31580.22926130.18833019330806
4.3158-4.40970.22975690.18173026930838
4.4097-4.51220.24056480.183007430722
4.5122-4.62510.21876060.17233027530881
4.6251-4.75010.21446280.16573022030848
4.7501-4.88990.20765740.16173016530739
4.8899-5.04770.21966270.16223029630923
5.0477-5.22810.19886380.1543024630884
5.2281-5.43740.20735860.15263023930825
5.4374-5.68490.20816680.15613018630854
5.6849-5.98460.20966120.15443034630958
5.9846-6.35940.20336200.15513025630876
6.3594-6.85040.22486140.16443035730971
6.8504-7.53950.21795760.16493035130927
7.5395-8.62990.21425910.17233040330994
8.6299-10.87060.22016030.18383047831081
10.8706-98.42160.23586330.2183075331386
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.11660.0164-0.05650.1299-0.0310.1813-0.01240.0009-0.03190.0192-0.0574-0.05590.01490.0477-0.75240.22590.00570.00360.28270.07690.222168.2847-1.338647.9395
20.07620.02370.1870.23220.07150.1909-0.10530.04690.1560.0003-0.03180.3532-0.324-0.3344-0.68220.63290.3403-0.17610.4630.1630.462912.805267.24626.2437
30.20210.07670.10970.05280.01870.20710.0065-0.2207-0.02780.1297-0.0847-0.2029-0.02060.2874-0.28560.27240.012-0.11650.71780.27920.5193114.9819-7.121382.3612
40.1720.02710.01490.130.10270.05940.03390.14170.0791-0.0493-0.1136-0.0826-0.09870.1144-0.14550.27660.0710.14290.5540.18770.4676123.18494.313416.5455
50.1446-0.07770.08750.0496-0.02420.0592-0.08480.0197-0.1664-0.0640.0273-0.05410.1931-0.058-0.00020.5432-0.10170.15540.316-0.10150.423333.1776-60.503437.8208
60.09030.0923-0.05650.2916-0.02210.18450.0759-0.0836-0.02050.1949-0.1349-0.1251-0.10050.0459-0.11210.4724-0.07560.00210.4204-0.02060.192358.101225.1599102.8307
70.01070.02320.04390.10760.04610.0211-0.1260.16930.3688-0.0553-0.07050.1541-0.2177-0.0053-0.25480.82990.1759-0.21410.33340.24380.712626.046993.457128.8163
80.0445-0.0125-0.00240.0683-0.01760.00040.09960.0936-0.06180.2453-0.04120.06150.0121-0.141600.4591-0.04450.16240.51440.0090.3556-4.1387-11.5391106.534
90.04440.0123-0.02820.0189-0.03690.05480.00340.07940.14350.04770.07550.03360.1421-0.08860.00480.33470.10580.06310.39550.0130.35254.902131.789177.4502
100.0718-0.1223-0.02140.14320.0091-0.00260.05790.018-0.0211-0.0952-0.0645-0.1618-0.10040.2178-0.01050.4487-0.2717-0.0450.94050.23150.8301154.637640.113253.3069
110.0104-0.03970.02080.1754-0.06410.0329-0.07680.0905-0.0226-0.09260.12080.19190.2203-0.15020.01990.4933-0.2259-0.05760.8207-0.12570.3926-11.9683-32.491718.9196
120.05120.001-0.06320.0455-0.0250.07970.0140.07820.0135-0.1657-0.00890.1174-0.0175-0.1083-0.00290.4567-0.0288-0.12790.65330.07510.273610.473827.50513.2374
130.0285-0.00350.02080.04920.02190.0175-0.14670.23520.0902-0.24420.0488-0.0223-0.2150.00860.00031.00970.0396-0.12420.7380.28270.622631.284879.0923-7.6746
140.02950.0097-0.0103-0.0015-0.02290.004-0.0052-0.10530.19060.0765-0.0129-0.1125-0.01740.0940.03190.5234-0.2467-0.19930.51360.02710.454899.104255.3487.7051
150.01830.0212-0.01110.0217-0.00580.0454-0.01970.057-0.04740.0438-0.06080.14650.2076-0.127700.3914-0.04490.0730.75840.06710.4953-26.2181-13.645365.2468
160.0804-0.00580.00430.01810.05480.0598-0.0173-0.1460.13690.0781-0.0818-0.151-0.08830.1214-0.10580.246-0.1606-0.11220.5650.24860.4299119.405532.475261.6115
170.02890.0344-0.0450.0685-0.04920.0451-0.05260.0459-0.10940.05410.0118-0.0550.1092-0.1701-0.00080.3493-0.12120.0390.3932-0.07930.2323.3739-29.459457.235
180.0117-0.04140.0230.1251-0.05810.0573-0.02360.0043-0.00230.0458-0.05320.13410.08270.0221-0.0010.47660.01370.02850.31550.12310.450555.4773-39.84182.8594
190.0508-0.0465-0.02090.0546-0.04890.08120.1067-0.08080.18120.0881-0.16570.0105-0.31790.0652-0.02610.6206-0.13350.0410.3414-0.03150.226452.167650.210190.0078
200.0403-0.0414-0.0352-0.04990.00560.01140.01520.0604-0.05880.0254-0.0131-0.17930.16910.011-0.01940.58460.24570.20030.67790.06060.7874121.5537-57.358110.7912
210.0586-0.004-0.08780.0584-0.03330.1078-0.05050.12580.1514-0.2270.0244-0.01180.0426-0.22950.00040.2680.0293-0.02220.6912-0.01460.4519-12.34414.712747.4763
220.00960.0441-0.01810.0894-0.02150.01980.0438-0.03210.02160.0739-0.09110.12430.0597-0.0521-0.00640.5060.2559-0.05930.43040.08350.33721.928355.29950.1593
230.0034-0.00080.00550.0074-0.00150.00560.0894-0.0086-0.13110.0533-0.03530.02820.0035-0.00301.1180.33040.02640.78720.15221.2219113.3981-89.090542.3105
240.025-0.0340.01490.0374-0.00850.0079-0.12380.01830.0083-0.1283-0.10410.110.0711-0.07060.00030.65550.04630.08150.4539-0.08720.424648.8592-44.8268-0.1064
250.1387-0.00510.0140.31260.11630.13350.1009-0.0775-0.02580.1977-0.0638-0.03810.0764-0.0325-0.0010.6171-0.1340.05190.37890.05960.3939201.5692-25.1337274.7438
260.003-0.00110.01610.0291-0.03720.03810.0265-0.0108-0.1449-0.04660.05280.02470.1013-0.126500.9680.0090.16020.5763-0.08610.647857.0866-80.59723.8691
270.0321-0.03610.00710.03650.01290.0729-0.04720.0960.01670.04180.057-0.0975-0.02370.18020.00790.32450.1568-0.07110.8790.2640.7512133.3737-24.415774.0698
280.0532-0.0333-0.03070.02660.020.0193-0.0221-0.053-0.07680.13010.07990.03850.080.1192-0.01570.5088-0.0923-0.17470.82890.27240.475396.9644-11.1182117.3636
290.031-0.0088-0.00560.0075-0.01180.019-0.0445-0.0412-0.00550.0582-0.0691-0.141-0.04250.1447-0.00050.51260.24450.17121.24340.10031.2075172.8056-26.989319.4152
300.08160.0166-0.07030.1314-0.08650.07790.0076-0.08990.07280.12620.00440.0425-0.1903-0.02840.00470.5486-0.1719-0.0470.4451-0.06660.242272.524354.420578.71
310.0175-0.04010.03660.0202-0.020.0369-0.00660.03020.1210.0152-0.0156-0.01250.0410.065500.44990.0962-0.01110.41240.04220.354841.890756.620763.3625
320.00620.0104-0.00160.0078-0.00230.0045-0.0448-0.02860.0732-0.00640.0424-0.01950.01540.042800.78460.12710.25361.08980.13870.9348155.7822-23.0008-8.311
330.01570.0055-0.01090.0061-0.00870.00950.0885-0.01650.00370.1111-0.0117-0.05580.08390.0277-0.00010.64130.11430.12850.38550.06870.615773.0743-71.392456.1114
340.07880.05210.00250.0325-0.00530.0162-0.0081-0.2134-0.17940.1136-0.0154-0.0430.026-0.03640.00070.4032-0.10810.00880.36590.00940.272343.07610.653197.5509
350.0040.0174-0.00320.04720.00410.003-0.0007-0.02460.07290.23380.0889-0.1330.02030.07480.00820.2997-0.0360.07090.50040.03070.26499.204-13.711583.9669
360.0266-0.0179-0.02760.02970.02750.0074-0.0975-0.1024-0.01340.05010.0159-0.16330.03150.087700.53040.24650.04880.79950.17560.8364141.6337-26.97728.515
370.1431-0.0161-0.1310.00660.01880.118-0.1167-0.0474-0.04860.1002-0.0244-0.0327-0.02530.2371-0.02910.3941-0.03-0.15730.8220.13520.5877128.59541.139394.4724
380.0150.0035-0.02690.0415-0.02070.0208-0.0510.07370.11420.0234-0.064-0.2-0.10670.11240.00010.6035-0.2377-0.10360.68510.27110.7231120.182163.959355.8712
390.0338-0.0173-0.00910.0452-0.02090.0148-0.06580.00310.10080.0572-0.0774-0.12990.1540.0701-00.42270.0226-0.09430.49460.1520.4684108.0474-2.251471.0092
400-0.00080.00070.0074-0.00340.0043-0.05380.0561-0.0568-0.0259-0.0919-0.01670.0309-0.05650.00020.77690.3661-0.01060.96760.12511.0072148.8457-61.169452.7362
410.0128-0.01470.00850.0184-0.00380.009-0.0114-0.0131-0.06850.02680.021-0.08340.0150.003200.36840.0581-0.0160.59440.26250.5947101.4768-23.431675.8838
420.0117-0.0069-0.00520.00440.00460.00520.00510.02520.0078-0.04940.09850.07440.0447-0.018-0.00010.505-0.0323-0.09440.7743-0.15690.42851.6299-16.71367.9512
430.0043-0.00340.00110.0024-0.00220.00110.0090.04440.0082-0.03430.041-0.0301-0.02060.018600.6420.14630.13870.85860.15460.565486.7412-4.9327-22.1562
440.03360.0489-0.0160.0485-0.03090.0088-0.0690.1150.0795-0.13710.0063-0.2085-0.13560.07340.00010.5398-0.1216-0.08360.45930.14010.505573.098861.208131.9488
450.02950.00420.03290.0238-0.01790.0393-0.0184-0.05660.0158-0.04420.0689-0.1153-0.10690.0732-0.00370.37340.14110.25520.66310.16280.585124.7335-13.48081.7069
460.0755-0.0070.04350.02820.00910.05460.01530.02750.0191-0.0066-0.0181-0.02540.0182-0.011701.1011-0.04750.0271.00620.07341.0298137.9361-6.74115.5409
470.0205-0.0022-0.0696-0.0020.07030.077-0.0205-0.0371-0.09870.1332-0.10050.01270.1138-0.0916-0.00180.76610.02750.07070.73680.20640.442948.900640.6854-47.6821
480.0920.0252-0.01140.1215-0.01890.1502-0.03710.05370.0207-0.02350.0240.0311-0.013-0.10690.00080.1912-0.0174-0.05540.25190.01870.3104197.2644-2.6422175.3908
490.01310.02240.08090.01910.02090.0852-0.06730.07620.0335-0.02740.162-0.4085-0.10390.136-0.02790.3862-0.1058-0.07090.2341-0.0990.6348264.776857.2696186.6266
500.1645-0.0190.11850.1282-0.07540.1283-0.11020.02510.0121-0.08690.11850.22210.0206-0.22950.02080.2565-0.0123-0.13870.71970.1180.5885143.6018-0.5194152.6461
510.0011-0.0032-0.00430.0714-0.04280.0041-0.03040.06840.0490.0751-0.0646-0.0066-0.161-0.1843-0.0010.32860.11070.05920.4694-0.02350.4313151.85566.9859218.9109
520.18440.06540.01530.09470.03990.132-0.08280.1107-0.0681-0.01460.0848-0.03490.1373-0.06670.00970.3548-0.05110.07070.1395-0.05130.386225.9738-65.7877174.5722
530.05740.07510.01870.19080.03810.03660.00620.05130.0336-0.13930.02610.0717-0.0212-0.01380.06610.41510.0041-0.12690.45180.12610.3746198.082826.4899120.8663
540.03780.11590.02730.14410.05560.1461-0.1120.13790.0305-0.08540.1071-0.1551-0.18370.07360.00070.624-0.1418-0.15970.2951-0.0020.5888255.193284.9731187.6233
550.05550.0820.02590.10870.03390.0041-0.0880.23320.0116-0.04140.0133-0.02-0.1128-0.02160.00010.478-0.10210.12460.5336-0.03480.3624253.1156-16.3464101.4587
560.0143-0.0118-0.0150.00110.00260.0910.06790.0660.0365-0.12010.0674-0.09470.1152-0.03220.01140.3303-0.10910.00480.22330.05090.449256.091225.3974133.732
570.09440.07390.00390.146-0.05730.02740.0172-0.02370.13650.1039-0.07240.1375-0.1654-0.22010.00510.62260.3608-0.01410.84350.00561.145117.890748.662192.0082
580.01010.03270.04590.02720.04380.0606-0.0264-0.0032-0.1163-0.03570.0668-0.12430.0950.1318-00.32460.0330.00260.34520.00630.5865277.4658-44.0402184.0681
590.0845-0.04840.05170.07870.04030.17690.1227-0.0817-0.08880.2270.0492-0.41930.08720.03990.30960.48410.0672-0.59860.2979-0.07380.8343263.957716.8629197.7865
600.0368-0.01120.04970.0614-0.00380.07950.0884-0.16080.05490.12150.0609-0.03120.2022-0.01890.00330.6229-0-0.13010.278-0.08740.5371255.746369.6324224.0799
610.057-0.0334-0.00170.05360.00980.0046-0.02130.18220.1694-0.02870.05540.1238-0.1573-0.10530.2750.42080.1684-0.18860.54640.16550.5758165.520359.9378146.307
620.0452-0.0179-0.00040.05170.00750.0785-0.15490.1070.0169-0.08840.1288-0.01110.22840.09530.00120.2782-0.0890.12820.4056-0.05140.4701283.2615-23.9989136.4656
630.09160.0075-0.05010.0710.03230.0184-0.0194-0.03110.1186-0.0074-0.02160.199-0.0808-0.1849-0.01960.35540.2406-0.1270.60660.04660.6054148.976237.7289175.4744
640.092-0.0551-0.1180.01110.08290.3467-0.0695-0.0345-0.05410.0504-0.00190.07080.07910.1093-0.02270.207-0.02630.0690.1436-0.06740.3468254.3263-37.0154150.3858
650.08340.00840.15640.3626-0.05710.2594-0.12990.24910.1168-0.38690.0451-0.1741-0.03540.068-0.05690.4305-0.1510.00350.3765-0.03190.3547196.8846-39.5587136.8901
66-0.01060.0204-0.02150.1011-0.06110.0282-0.07950.14510.1757-0.0948-0.02740.1134-0.12430.029-0.00480.5806-0.0161-0.13080.38130.1370.4489209.815949.7655132.9352
670.04340.1136-0.03270.025-0.04290.01170.0775-0.0716-0.02350.00650.03640.13370.0815-0.0310.01280.4195-0.11340.01080.61570.10430.6069147.236-56.3187221.0911
680.12280.0239-0.10740.0358-0.00310.11270.0126-0.0737-0.04740.0313-0.0263-0.1031-0.04970.121700.2936-0.0298-0.0340.3411-0.02840.4903277.41854.4057158.0649
690.0538-0.0652-0.02730.03490.01080.14970.01520.00430.0516-0.05950.0034-0.1585-0.15880.0288-0.00180.3734-0.105-0.07350.2025-0.00380.4879248.741348.4731165.0113
700.0125-0.00920.00230.02110.0040.00670.14150.0179-0.12740.02490.05690.0672-0.0038-0.00420.00060.6995-0.4177-0.17050.84540.11361.067144.047-84.8564187.394
710.05970.019-0.00240.0426-0.01970.0108-0.1027-0.0795-0.09910.11580.03340.05570.07670.0503-0.00110.3993-0.0219-0.03450.16910.04620.341221.4526-51.093215.7014
72-0.008-0.01920.00810.0175-0.02820.0172-0.12030.00710.06490.03780.01650.13640.0495-0.0126-0.00370.6058-0.03760.06570.1844-0.01260.5217208.9598-85.2082212.1241
730.07190.03950.00170.0609-0.06220.07670.03080.01240.09010.04150.01360.1512-0.0649-0.1080.00270.3394-0.1095-0.14750.86160.08430.7597125.5667-16.177164.0979
740.0113-0.00840.00060.05150.04690.0491-0.1177-0.0161-0.0871-0.02840.06550.05170.0742-0.2015-0.21710.4747-0.0799-0.36970.79380.15550.5533152.7104-4.0608114.2787
750.03020.01820.06140.01010.04160.1531-0.1346-0.16550.02880.0076-0.09440.1211-0.0605-0.0698-0.01030.4677-0.01840.19761.38430.14911.169799.3807-18.1976226.3915
760.0724-0.0252-0.04930.0290.05230.104-0.12830.06970.1354-0.06560.01890.1086-0.098-0.0895-0.24640.4420.0761-0.22340.31450.18840.5285193.220355.4779148.7653
770.0552-0.01510.02910.02140.01160.0314-0.04990.04730.0827-0.00150.00340.067-0.0938-0.07510.00010.5216-0.118-0.11990.31880.11590.4185226.76153.0314156.5931
780.01550.0025-0.01130.00880.00050.0072-0.0227-0.0190.03860.008-0.1596-0.0083-0.0285-0.1320.00040.5658-0.01420.18231.0550.00990.771122.6631-18.5359249.4355
790.0334-0.0004-0.02020.01170.0060.01620.0479-0.01430.0218-0.03290.05950.03730.0013-0.03360.0020.4228-0.1906-0.03790.3386-0.05230.4909182.1113-70.8723165.552
800.0359-0.0595-0.00720.05450.02420.0111-0.04760.1693-0.0558-0.08280.1147-0.10260.0038-0.01490.02070.3003-0.0739-0.10420.43840.04290.2539210.78530.1813121.4768
810.027-0.02250.00640.02490.01540.0426-0.14940.12320.1429-0.09930.08740.073-0.0089-0.0544-0.00250.3556-0.09170.07260.4324-0.02050.3218244.8445-18.9043126.3671
820.0073-0.0077-0.02050.0187-0.03190.03780.0347-0.01780.0261-0.02530.11040.0896-0.0154-0.17940.010.3114-0.00640.10360.94270.08420.7839127.4874-21.0449210.2027
830.064-0.03020.05620.0135-0.02340.1178-0.07920.10650.0561-0.04780.1250.0752-0.0298-0.2543-0.01060.4626-0.0306-0.25930.88330.14570.7392128.674410.0692144.3759
840.0240.0114-0.01320.05380.03670.0159-0.1139-0.17580.0292-0.0155-0.09880.1442-0.11640.0109-0.00590.66460.2476-0.14580.63680.07370.8603153.580268.6026182.562
85-0.00410.00650.03060.0148-0.04160.1010.05490.1912-0.06220.0278-0.0306-0.0598-0.0484-0.17710.01120.31150.0036-0.16460.58630.05240.5573153.44062.7309162.2397
860.00780.0068-0.00360.0061-0.00440.0054-0.1007-0.0735-0.02680.1008-0.1350.07030.04790.02050.00010.5665-0.277-0.03231.13330.0521.1219110.9335-52.4235186.7015
870.01540.0092-0.00040.0057-0.00530.0057-00.0607-0.0494-0.05450.00820.1327-0.0038-0.0103-0.00010.4852-0.1263-0.06850.7868-0.05350.5727156.1202-18.5988154.9833
880.0170.0013-0.01810.0014-0.00060.02060.0547-0.09290.0612-0.02580.0171-0.09160.00920.05770.01470.36840.1124-0.16310.29440.04140.5586268.4421-27.9605198.408
890.0021-0.00020.00480.0049-0.00210.00550.03890.04170.0021-0.00230.02360.0333-0.0067-0.0157-0.00010.4677-0.07620.10450.36580.12650.4216192.7372-9.1859247.5688
900.0292-0.00180.01410.00820.01440.03040.0231-0.10890.22740.1747-0.13190.0129-0.0258-0.057-00.61480.1622-0.0680.4234-0.05140.759204.19359.252194.3491
910.0093-0.0036-0.0028-0.00190.00770.0152-0.04920.0891-0.02910.0822-0.00740.189-0.0688-0.07850.00010.2733-0.04630.10450.54940.00560.4065151.4154-11.6954232.8078
920.0315-0.0502-0.06210.02560.01960.0366-0.08480.032-0.1126-0.10070.09340.0721-0.0420.08590.00450.6572-0.0145-0.05060.4740.10070.673244.111239.7323258.7179
930.1515-0.0814-0.01930.3548-0.17130.25240.05120.302-0.0708-0.1676-0.0723-0.08810.0274-0.06090.44050.57530.20280.10080.74130.03420.309482.058-19.0614-51.7403
940.0374-0.0262-0.00550.0341-0.02170.0181-0.01040.05590.0954-0.021-0.0343-0.1317-0.13830.0276-0.00311.2590.23990.51111.34190.42950.9614126.02738.6752-92.1076
950.0033-0.01390.01160.0165-0.02660.03890.08620.0790.11810.0041-0.1124-0.1178-0.10780.0737-01.0424-0.3516-0.02391.11890.13811.3867144.523928.3347-24.7469
960.0365-0.03880.04320.0274-0.03590.057-0.08330.26460.0248-0.23020.04150.04310.06270.017-01.1160.25550.13741.06980.09160.61791.7178-9.1873-87.7949
970.01680.03370.00050.05880.00270.03050.00920.05740.0028-0.09360.0192-0.0760.0174-0.127901.07890.27440.05431.31830.24810.641860.850229.6631-91.2258
980.0437-0.0091-0.03020.039-0.02590.0331-0.10620.1415-0.1639-0.18130.0668-0.04090.1578-0.03610.00011.17910.08610.09621.0031-0.32260.761382.8872-80.4515-67.7032
990.02110.01910.00830.04690.0460.03610.0459-0.06090.1230.05350.04130.0302-0.0850.0988-0.00011.35190.0913-0.00981.01540.35181.3443101.609877.3743-61.4069
1000.05530.0013-0.00330.0762-0.07280.03580.2276-0.0301-0.07020.042-0.03680.13370.0561-0.02540.00120.9269-0.16610.05430.6599-0.24010.904352.929-97.4149-21.9347
1010.01930.03390.02530.03480.0430.0430.04120.013-0.01460.0389-0.0906-0.01220.0479-0.04070.02620.88080.40650.52931.33540.10160.974149.8532-47.3483-75.075
1020.020.01010.02180.03610.01390.0096-0.0652-0.0212-0.2081-0.04570.0136-0.04790.22480.085500.87990.17430.16770.6247-0.03980.871198.6179-88.2294-16.1892
1030.013-0.0205-0.01750.0467-0.01130.0338-0.10720.1376-0.0979-0.2103-0.05360.0735-0.0275-0.15140.00011.45370.1479-0.06641.3238-0.09890.692662.8858-41.0403-87.6818
1040.01550.008-0.0019-0.00030.00050.0118-0.07550.0244-0.07580.0128-0.01640.1463-0.0526-0.0550.00011.03530.06530.05091.26180.20840.893327.288933.6527-83.3397
1050.017-0.026-0.01330.02470.02720.04460.09990.0006-0.1156-0.0058-0.0843-0.17250.0570.115900.75910.12670.14470.8369-0.07790.8832111.7882-66.2952-35.1618
1060.00240.00570.00590.00460.00610.006-0.05020.0228-0.0451-0.0359-0.0002-0.03040.02260.021801.6774-0.0711-0.19441.8638-0.03621.7048-5.650326.0097-81.1096
1070.0177-0.0246-0.00620.02050.0040.00260.0251-0.019-0.1731-0.0065-0.038-0.18090.0662-0.01200.59360.09480.24870.93830.14840.836139.5798-29.3967-39.0904
108-0.0041-0.00170.00330.0036-0.00430.0128-0.0223-0.01440.08810.0298-0.0619-0.1448-0.05120.06080.00011.0145-0.25470.00970.48380.23750.9231121.27740.1117-26.3301
1090.0002-0.0012-0.00460.00720.0070.01860.05410.00940.0034-0.01420.00410.08430.05340.122101.20.39570.20661.09640.25320.719128.851870.5047-42.8808
1100.02140.01250.01350.02570.02790.02320.0839-0.01580.1075-0.03120.0307-0.14710.053-0.0142-0.00011.06540.20740.12231.0510.47281.151987.775177.5882-85.3603
1110.0152-0.00430.0017-0.0044-0.0150.0074-0.0563-0.06670.0612-0.06020.0135-0.0286-0.1458-0.03460.00010.92960.21440.21640.91280.33280.8409114.520830.7619-95.3309
1120.0037-0.0125-0.01090.01520.008-0.0026-0.0487-0.17710.16770.03910.0428-0.0934-0.0712-0.0366-01.20540.28330.19240.89540.18710.76156.325790.5355-41.0363
1130.0054-0.0243-0.01620.05790.01840.00480.04710.05820.1040.05690.0132-0.01680.0226-0.0170.01421.34220.36280.24120.77080.49421.078164.171695.5313-73.5699
1140.036-0.00990.0242-0.0008-0.00550.0119-0.1137-0.0374-0.087-0.0482-0.08660.04970.01960.0498-0.00670.99320.2560.01051.20280.41930.639959.338956.156-99.4026
1150.0141-0.0136-0.02450.010.01680.0347-0.0070.0547-0.0309-0.0415-0.0128-0.01840.0639-0.079401.23390.1730.48351.33990.13560.9158117.5546-11.5534-93.6964
1160.0223-0.0225-0.00060.0276-0.01130.034-0.04830.11890.0323-0.1253-0.0051-0.13230.11020.0307-0.00160.98070.23680.37491.1320.08420.6046114.5789-32.6173-72.8881
1170.0220.0264-0.02830.0195-0.02480.0185-0.02070.07510.0627-0.27660.06390.03090.0318-0.0711-0.00010.74170.07680.0720.78690.08320.649964.1473-20.8524-44.9855
1180.0345-0.02430.0070.01870.01230.0210.00170.0925-0.163-0.16870.09320.137-0.0014-0.0018-01.1122-0.0579-0.06531.1781-0.22370.749644.7682-76.3489-67.8049
119-0.00160.00090.00140.000800.00060.0264-0.0360.0114-0.03330.008-0.02290.0142-0.006101.58650.04890.00661.25650.14721.614890.4101102.3792-50.2814
1200.0043-0.0006-0.00240.009-0.01650.02850.05890.00610.0916-0.0050.0632-0.0858-0.06640.0741-0.00020.9632-0.03020.16610.87320.2630.7936117.510223.4868-43.4077
1210.0188-0.0151-0.02070.00610.00920.0199-0.0043-0.0133-0.08510.0589-0.0692-0.14030.0017-0.00230.00010.77670.02580.3241.11590.16420.9752152.0061-16.7339-57.6358
1220.0032-0.003500.0046-0.00430.0021-0.0314-0.00160.01820.031-0.0029-0.0118-0.0285-0.050.00011.09430.0765-0.10791.24810.26881.4289117.745457.2619-58.5056
1230.0032-0.00440.00250.0015-0.00560.0109-0.00940.0292-0.0259-0.0643-0.0113-0.02190.0792-0.00920.00010.92820.14850.09091.09490.23270.599748.708248.1181-73.0759
1240.0148-0.0065-0.00240.0081-0.00650.00990.00770.0925-0.0343-0.10830.03960.06030.05290.0309-00.86350.1620.01330.9742-0.00750.879549.7769-12.261-73.6103
1250.0052-0.00440.0058-0.0029-0.0041-0.003-0.00810.04170.0574-0.06670.05170.0675-0.0223-0.020201.16730.03340.01711.39450.09771.26062.4943.4078-60.7056
1260.037-0.02560.00120.0082-0.010.05030.09420.05020.0582-0.0787-0.0433-0.08230.01980.1075-01.21680.27170.36091.49070.6361.1352106.383758.1436-117.3143
1270.02960.00850.0015-0.00160.00240.01140.041-0.14840.17480.2012-0.1240.1185-0.03620.0371-0.00261.375-0.2890.44270.7889-0.22980.7499169.1071.7332325.086
1280.01240.0028-0.00430.08510.07760.062-0.00170.04650.13550.0294-0.13210.1488-0.1208-0.21320.00010.80520.19960.23950.8954-0.11070.9806137.553925.4161263.284
1290.0633-0.01580.02210.05640.02650.06620.113-0.31720.10030.1832-0.0647-0.04650.0595-0.0065-0.00011.1693-0.275-0.01320.60670.02080.5496201.0392-16.7363312.4985
1300.0018-0.02460.0140.0819-0.06750.0419-0.1738-0.2319-0.24530.1564-0.1214-0.07430.2130.0774-0.00010.94960.03030.10070.73930.13531.1633232.364223.2652313.8019
1310.0480.0260.00040.03750.04070.0145-0.029-0.087-0.07670.32080.08960.07550.2102-0.06150.00171.2151-0.1546-0.10770.40860.12220.6056201.9599-87.2271287.7641
1320.0683-0.05310.01440.04950.01180.02230.02580.1020.1990.04580.07240.14130.0684-0.1093-0.00020.8726-0.09720.14990.75260.00371.2595188.386670.1361288.0915
1330.0783-0.016-0.0570.09950.08210.26470.11740.0952-0.19920.2219-0.004-0.26720.1351-0.10780.00950.91790.0851-0.05910.39760.03080.881221.9657-102.7779234.8042
1340.0579-0.04490.03250.0424-0.02210.02590.1101-0.0447-0.0717-0.0063-0.03160.10350.0281-0.0070.03481.0125-0.38570.3820.960.02860.7693139.9472-52.5581311.2324
1350.0049-0.01250.00470.0485-0.0008-0.00090.09550.096-0.2132-0.00870.00750.11570.1347-0.1021-0.00010.7269-0.2185-0.04750.480.01090.7188175.4314-91.6331240.527
1360.02920.0088-0.00770.03130.02450.0307-0.0208-0.103-0.00390.2615-0.0469-0.07960.11260.0523-01.3412-0.129-0.27920.71610.09020.5462227.6118-49.6277304.7804
1370.002-0.00580.00640.00880.00530.01970.09760.0451-0.09480.05930.01950.15980.1248-0.0699-0.00010.7332-0.21140.10160.48810.01780.7659168.4805-71.0176262.7943
138-0.00090.00120.0005-0.00150.0004-0.0010.00390.01050.03930.0788-0.00810.00360.01160.017601.77490.11820.06531.94240.04352.0866297.752920.1674295.9233
1390.01060.0096-0.00030.03-0.00080.0085-0.0024-0.1876-0.06660.1294-0.06990.2117-0.0029-0.11460.00010.6562-0.17940.18060.73520.00510.6785143.0725-33.0762274.387
1400.00090.00460.0050.02220.01220.0037-0.01520.05020.11-0.1181-0.0331-0.0541-0.198-0.006300.91640.16450.1480.6415-0.12740.8311160.634137.1566260.4091
1410.0058-0.0044-0.01790.00040.01340.0398-0.06010.17530.071-0.1138-0.1552-0.06350.1180.06190.00011.0415-0.2180.35990.808-0.08381.1239257.531860.1009258.6785
1420.01520.0124-0.02120.0352-0.03030.0240.0509-0.05620.15320.060.05110.05060.0017-0.0062-0.00010.9946-0.1040.22050.5963-0.14490.9705205.695671.0705309.776
1430.05030.01670.01280.0412-0.01270.0344-0.1079-0.0005-0.00060.11-0.11540.0507-0.0847-0.0087-0.01891.1189-0.16690.27530.8373-0.24880.7641181.421625.6927326.3171
1440.02110.0343-0.01820.0401-0.00370.0257-0.11490.28920.0713-0.16050.03620.02540.1506-0.0990.00010.9684-0.3340.04790.88760.13580.9551230.415881.2345260.5031
1450.00640.0118-0.00130.01820.01390.00280.0738-0.01790.18030.09690.12190.0816-0.06090.0062-0.00011.0123-0.19030.08080.622-0.13421.142227.512887.8678293.7527
1460.01060.0127-0.00450.0084-0.00820.0041-0.0114-0.02350.03540.0398-0.03780.0027-0.0364-0.019601.22910.23720.22871.26010.2161.4194264.5227.4444301.8145
1470.0254-0.03360.00120.02280.004-0.0022-0.11370.0051-0.1935-0.0282-0.0618-0.0370.0956-0.0574-00.955-0.1381-0.14560.8055-0.12340.8018236.14350.4202321.1676
1480.01660.00570.01350.01520.00950.0322-0.0263-0.1390.10240.0975-0.09570.13460.0786-0.0336-0.00251.2132-0.20020.31620.86250.00590.6608176.8025-18.6079323.6533
1490.01220.01560.00980.0238-0.01070.01990.0379-0.1459-0.05980.1117-0.07590.1129-0.01070.129500.9453-0.17190.22850.58710.03830.4528174.5415-38.5561301.8522
1500.01580.01570.02620.0740.05790.04630.0293-0.04410.00350.1279-0.0277-0.15340.0035-0.0049-00.5628-0.10170.00650.3936-0.01540.5275218.4124-27.093264.4206
1510.0261-0.04930.02070.0344-0.00940.01670.0495-0.0243-0.13640.33150.0527-0.18150.06360.052701.0160.0388-0.36260.47110.09820.9397239.3005-84.5636280.0035
1520.010.00770.00620.00610.00160.00160.00020.0559-0.0299-0.0468-0.02620.0416-0.0607-0.0484-01.014-0.06690.15750.7730.19791.4881198.561194.3171274.162
1530.0121-0.01140.03020.0083-0.00860.04180.1163-0.0252-0.00820.02620.04080.1015-0.1723-0.025-00.90850.00860.16350.6594-0.09450.5271167.63218.8244275.9106
1540.01240.0126-0.00990.0135-0.00670.00920.0449-0.0319-0.07320.1175-0.09220.1055-0.05720.007600.8074-0.05960.41140.89770.02060.7833135.2588-20.8823295.4198
1550.00620.0045-0.00620.002-0.00230.0025-0.0173-0.01510.0374-0.0597-0.00010.05760.0081-0.066-00.8892-0.16310.27791.05050.09731.2414171.76750.241288.5394
1560.0040.0050.00550.01310.00720.01150.04840.00190.0163-0.055-0.02440.00250.02580.0575-00.8811-0.1710.02190.7916-0.10191.1564242.086940.5223293.141
1570.02340.0014-0.00230.02370.01630.00790.09770.06520.1190.0770.0217-0.1152-0.0555-0.0004-0.00010.7739-0.2132-0.15780.68940.01580.7554239.0251-20.3356289.929
158-0.00050.0011-00.0044-0.00260.0006-0.0046-0.05540.00750.02560.00580.0144-0.0043-0.0216-01.71690.08620.02041.78520.0561.812294.807839.816279.5578
1590.00280.0058-0.00210.01320.00140.04950.0602-0.15710.18250.3329-0.0336-0.06770.004-0.0835-01.5738-0.15370.38551.2116-0.39750.958191.168853.4343344.4866
1600.02470.00810.00610.0302-0.03480.04640.0972-0.0020.00870.0178-0.0222-0.02430.04520.1602-0.00011.1311-0.0052-0.11121.20140.25941.5576324.7389-14.8542187.6109
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 113 - 3396
2X-RAY DIFFRACTION2chain 331 - 121
3X-RAY DIFFRACTION3chain 441 - 158
4X-RAY DIFFRACTION4chain jj2 - 253
5X-RAY DIFFRACTION5chain kk2 - 387
6X-RAY DIFFRACTION6chain ll2 - 362
7X-RAY DIFFRACTION7chain mm2 - 297
8X-RAY DIFFRACTION8chain nn2 - 176
9X-RAY DIFFRACTION9chain oo23 - 244
10X-RAY DIFFRACTION10chain pp24 - 256
11X-RAY DIFFRACTION11chain qq1 - 191
12X-RAY DIFFRACTION12chain rr2 - 221
13X-RAY DIFFRACTION13chain ss6 - 174
14X-RAY DIFFRACTION14chain tt2 - 194
15X-RAY DIFFRACTION15chain uu3 - 138
16X-RAY DIFFRACTION16chain vv2 - 204
17X-RAY DIFFRACTION17chain ww3 - 199
18X-RAY DIFFRACTION18chain xx2 - 184
19X-RAY DIFFRACTION19chain yy2 - 186
20X-RAY DIFFRACTION20chain zz2 - 189
21X-RAY DIFFRACTION21chain 001 - 172
22X-RAY DIFFRACTION22chain 222 - 160
23X-RAY DIFFRACTION23chain 559 - 108
24X-RAY DIFFRACTION24chain l2l22 - 137
25X-RAY DIFFRACTION25chain 661 - 1800
26X-RAY DIFFRACTION26chain 771 - 98
27X-RAY DIFFRACTION27chain 8822 - 142
28X-RAY DIFFRACTION28chain 992 - 127
29X-RAY DIFFRACTION29chain AAAA2 - 136
30X-RAY DIFFRACTION30chain ABAB2 - 149
31X-RAY DIFFRACTION31chain ACAC2 - 59
32X-RAY DIFFRACTION32chain ADAD9 - 105
33X-RAY DIFFRACTION33chain AEAE4 - 112
34X-RAY DIFFRACTION34chain AFAF2 - 128
35X-RAY DIFFRACTION35chain AGAG2 - 107
36X-RAY DIFFRACTION36chain AHAH2 - 113
37X-RAY DIFFRACTION37chain AIAI2 - 120
38X-RAY DIFFRACTION38chain AJAJ2 - 100
39X-RAY DIFFRACTION39chain AKAK2 - 100
40X-RAY DIFFRACTION40chain ALAL2 - 78
41X-RAY DIFFRACTION41chain AMAM2 - 51
42X-RAY DIFFRACTION42chain ANAN77 - 500
43X-RAY DIFFRACTION43chain AOAO1 - 25
44X-RAY DIFFRACTION44chain APAP2 - 501
45X-RAY DIFFRACTION45chain AQAQ2 - 501
46X-RAY DIFFRACTION46chain o1o11 - 1515
47X-RAY DIFFRACTION47chain ii9 - 176
48X-RAY DIFFRACTION48chain ARAR3 - 3396
49X-RAY DIFFRACTION49chain ASAS1 - 121
50X-RAY DIFFRACTION50chain ATAT1 - 158
51X-RAY DIFFRACTION51chain CDCD2 - 253
52X-RAY DIFFRACTION52chain CECE2 - 387
53X-RAY DIFFRACTION53chain CFCF2 - 362
54X-RAY DIFFRACTION54chain CGCG2 - 297
55X-RAY DIFFRACTION55chain CHCH2 - 176
56X-RAY DIFFRACTION56chain CICI23 - 244
57X-RAY DIFFRACTION57chain CJCJ24 - 256
58X-RAY DIFFRACTION58chain CKCK1 - 191
59X-RAY DIFFRACTION59chain CLCL2 - 221
60X-RAY DIFFRACTION60chain CMCM6 - 174
61X-RAY DIFFRACTION61chain CNCN2 - 194
62X-RAY DIFFRACTION62chain COCO3 - 138
63X-RAY DIFFRACTION63chain CPCP2 - 204
64X-RAY DIFFRACTION64chain CQCQ3 - 199
65X-RAY DIFFRACTION65chain CRCR2 - 184
66X-RAY DIFFRACTION66chain CSCS2 - 186
67X-RAY DIFFRACTION67chain CTCT2 - 189
68X-RAY DIFFRACTION68chain CUCU1 - 172
69X-RAY DIFFRACTION69chain CVCV2 - 160
70X-RAY DIFFRACTION70chain CWCW9 - 108
71X-RAY DIFFRACTION71chain CXCX2 - 137
72X-RAY DIFFRACTION72chain CYCY1 - 98
73X-RAY DIFFRACTION73chain CZCZ22 - 142
74X-RAY DIFFRACTION74chain DADA2 - 127
75X-RAY DIFFRACTION75chain DBDB2 - 136
76X-RAY DIFFRACTION76chain DCDC2 - 149
77X-RAY DIFFRACTION77chain DDDD2 - 59
78X-RAY DIFFRACTION78chain DEDE9 - 105
79X-RAY DIFFRACTION79chain DFDF4 - 112
80X-RAY DIFFRACTION80chain DGDG2 - 128
81X-RAY DIFFRACTION81chain DHDH2 - 107
82X-RAY DIFFRACTION82chain DIDI2 - 113
83X-RAY DIFFRACTION83chain DJDJ2 - 120
84X-RAY DIFFRACTION84chain DKDK2 - 100
85X-RAY DIFFRACTION85chain DLDL2 - 100
86X-RAY DIFFRACTION86chain DMDM2 - 78
87X-RAY DIFFRACTION87chain DNDN2 - 51
88X-RAY DIFFRACTION88chain DODO77 - 500
89X-RAY DIFFRACTION89chain DPDP1 - 25
90X-RAY DIFFRACTION90chain DQDQ2 - 501
91X-RAY DIFFRACTION91chain DRDR2 - 501
92X-RAY DIFFRACTION92chain sMsM23 - 174
93X-RAY DIFFRACTION93chain AA1 - 1798
94X-RAY DIFFRACTION94chain BB2 - 207
95X-RAY DIFFRACTION95chain CC20 - 233
96X-RAY DIFFRACTION96chain DD34 - 250
97X-RAY DIFFRACTION97chain EE3 - 225
98X-RAY DIFFRACTION98chain FF2 - 261
99X-RAY DIFFRACTION99chain GG20 - 225
100X-RAY DIFFRACTION100chain HH1 - 226
101X-RAY DIFFRACTION101chain II4 - 187
102X-RAY DIFFRACTION102chain JJ2 - 200
103X-RAY DIFFRACTION103chain KK2 - 186
104X-RAY DIFFRACTION104chain LL1 - 96
105X-RAY DIFFRACTION105chain MM2 - 156
106X-RAY DIFFRACTION106chain NN20 - 143
107X-RAY DIFFRACTION107chain OO2 - 151
108X-RAY DIFFRACTION108chain PP11 - 137
109X-RAY DIFFRACTION109chain QQ8 - 131
110X-RAY DIFFRACTION110chain RR3 - 143
111X-RAY DIFFRACTION111chain SS2 - 126
112X-RAY DIFFRACTION112chain TT2 - 146
113X-RAY DIFFRACTION113chain UU2 - 144
114X-RAY DIFFRACTION114chain VV15 - 121
115X-RAY DIFFRACTION115chain WW1 - 87
116X-RAY DIFFRACTION116chain XX2 - 130
117X-RAY DIFFRACTION117chain YY2 - 145
118X-RAY DIFFRACTION118chain ZZ2 - 135
119X-RAY DIFFRACTION119chain aa36 - 105
120X-RAY DIFFRACTION120chain bb2 - 500
121X-RAY DIFFRACTION121chain cc2 - 101
122X-RAY DIFFRACTION122chain dd5 - 67
123X-RAY DIFFRACTION123chain ee4 - 99
124X-RAY DIFFRACTION124chain ff2 - 61
125X-RAY DIFFRACTION125chain gg82 - 501
126X-RAY DIFFRACTION126chain hh2 - 319
127X-RAY DIFFRACTION127chain s0s02 - 207
128X-RAY DIFFRACTION128chain s1s120 - 235
129X-RAY DIFFRACTION129chain s2s234 - 250
130X-RAY DIFFRACTION130chain s3s33 - 225
131X-RAY DIFFRACTION131chain s4s42 - 261
132X-RAY DIFFRACTION132chain s5s520 - 225
133X-RAY DIFFRACTION133chain s6s61 - 218
134X-RAY DIFFRACTION134chain s7s72 - 187
135X-RAY DIFFRACTION135chain s8s82 - 200
136X-RAY DIFFRACTION136chain s9s92 - 186
137X-RAY DIFFRACTION137chain c1c12 - 147
138X-RAY DIFFRACTION138chain c2c220 - 143
139X-RAY DIFFRACTION139chain c3c32 - 151
140X-RAY DIFFRACTION140chain c4c410 - 137
141X-RAY DIFFRACTION141chain c5c54 - 138
142X-RAY DIFFRACTION142chain c6c62 - 143
143X-RAY DIFFRACTION143chain c7c72 - 122
144X-RAY DIFFRACTION144chain c8c82 - 146
145X-RAY DIFFRACTION145chain c9c92 - 144
146X-RAY DIFFRACTION146chain c0c01 - 98
147X-RAY DIFFRACTION147chain d0d012 - 121
148X-RAY DIFFRACTION148chain d1d11 - 87
149X-RAY DIFFRACTION149chain d2d22 - 130
150X-RAY DIFFRACTION150chain d3d32 - 145
151X-RAY DIFFRACTION151chain d4d42 - 135
152X-RAY DIFFRACTION152chain d5d537 - 105
153X-RAY DIFFRACTION153chain d6d62 - 500
154X-RAY DIFFRACTION154chain d7d72 - 1
155X-RAY DIFFRACTION155chain d8d85 - 67
156X-RAY DIFFRACTION156chain d9d94 - 99
157X-RAY DIFFRACTION157chain e0e02 - 63
158X-RAY DIFFRACTION158chain e1e1102 - 501
159X-RAY DIFFRACTION159chain sRsR2 - 319
160X-RAY DIFFRACTION160chain p0p03 - 221

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る