登録情報 データベース : PDB / ID : 1js8 構造の表示 ダウンロードとリンクタイトル Structure of a Functional Unit from Octopus Hemocyanin 要素Hemocyanin 詳細 キーワード OXYGEN STORAGE/TRANSPORT / GLYCOPROTEIN / MOLLUSC / OXYGEN-TRANSPORT / THIOETHER BOND / OXYGEN STORAGE-TRANSPORT COMPLEX機能・相同性 機能・相同性情報分子機能 ドメイン・相同性 構成要素
oxygen carrier activity / oxidoreductase activity / metal ion binding 類似検索 - 分子機能 Haemocyanin C-terminal domain / Hemocyanin; Chain: A, domain 2 / Haemocyanin beta-sandwich domain / Haemocyanin C-terminal domain superfamily / Haemocyanin beta-sandwich / di-copper center containing domain from catechol oxidase / Di-copper center containing domain from catechol oxidase / Tyrosinase CuA-binding region signature. / Common central domain of tyrosinase / Tyrosinase and hemocyanins CuB-binding region signature. ... Haemocyanin C-terminal domain / Hemocyanin; Chain: A, domain 2 / Haemocyanin beta-sandwich domain / Haemocyanin C-terminal domain superfamily / Haemocyanin beta-sandwich / di-copper center containing domain from catechol oxidase / Di-copper center containing domain from catechol oxidase / Tyrosinase CuA-binding region signature. / Common central domain of tyrosinase / Tyrosinase and hemocyanins CuB-binding region signature. / Tyrosinase copper-binding domain / Di-copper centre-containing domain superfamily / Sandwich / Orthogonal Bundle / Mainly Beta / Mainly Alpha 類似検索 - ドメイン・相同性 CU2-O2 CLUSTER / alpha-D-mannopyranose / Hemocyanin G-type, units Oda to Odg 類似検索 - 構成要素生物種 Octopus dofleini (無脊椎動物)手法 X線回折 / シンクロトロン / 多重同系置換・異常分散 , combined with partial MAD phasing / 解像度 : 2.3 Å 詳細データ登録者 Cuff, M.E. / Miller, K.I. / van Holde, K.E. / Hendrickson, W.A. 引用ジャーナル : J.Mol.Biol. / 年 : 1998タイトル : Crystal structure of a functional unit from Octopus hemocyanin.著者 : Cuff, M.E. / Miller, K.I. / van Holde, K.E. / Hendrickson, W.A. 履歴 登録 2001年8月16日 登録サイト : RCSB / 処理サイト : RCSB改定 1.0 2001年10月3日 Provider : repository / タイプ : Initial release改定 1.1 2007年10月16日 Group : Version format compliance改定 1.2 2011年7月13日 Group : Non-polymer description / Version format compliance改定 1.3 2017年10月4日 Group : Advisory / Refinement description / カテゴリ : pdbx_unobs_or_zero_occ_atoms / softwareItem : _pdbx_unobs_or_zero_occ_atoms.label_asym_id / _software.name改定 2.0 2020年7月29日 Group : Advisory / Atomic model ... Advisory / Atomic model / Data collection / Derived calculations / Structure summary カテゴリ : atom_site / chem_comp ... atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_struct_conn_angle / pdbx_unobs_or_zero_occ_atoms / pdbx_validate_close_contact / struct_asym / struct_conn / struct_conn_type / struct_site / struct_site_gen Item : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _entity.formula_weight / _entity.pdbx_description / _entity.pdbx_number_of_molecules / _entity.type / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_unobs_or_zero_occ_atoms.auth_asym_id / _pdbx_unobs_or_zero_occ_atoms.auth_atom_id / _pdbx_unobs_or_zero_occ_atoms.auth_seq_id / _pdbx_unobs_or_zero_occ_atoms.label_asym_id / _pdbx_unobs_or_zero_occ_atoms.label_atom_id / _pdbx_validate_close_contact.auth_asym_id_2 / _pdbx_validate_close_contact.auth_seq_id_2 / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn_type.id 解説 : Carbohydrate remediation / Provider : repository / タイプ : Remediation改定 2.1 2024年10月9日 Group : Data collection / Database references / Structure summaryカテゴリ : chem_comp / chem_comp_atom ... chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_modification_feature Item : _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI ... _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_entry_details.has_protein_modification
すべて表示 表示を減らす Remark 300 BIOMOLECULE: 1, 2 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 ... BIOMOLECULE: 1, 2 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). The native whole molecule cannot be generated from this information alone. Octopus hemocyanin is a 3.5MDa protein composed of 10 polypeptide subunits arranged about a D5 molecular symmetry axis. Each 350 kDa subunit contains 7 similar oxygen-binding functional units which occur serially along the polypeptide. Odg (this deposition) contains the C-terminal functional unit.