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- ChemComp-00Q: D-phenylalanyl-N-{(1S)-1-[(S)-1,3-benzothiazol-2-yl(hydroxy)methy... -

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Basic information

EntryDatabase: PDB chemical components / ID: 00Q
NameName: D-phenylalanyl-N-{(1S)-1-[(S)-1,3-benzothiazol-2-yl(hydroxy)methyl]-4-carbamimidamidobutyl}-L-prolinamide
Synonyms: RWJ-30353

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BIRD information

TypePeptide-like / Thrombin Inhibitor
DownloadsMolecular definition / Chemical definition / Family definition
Synonyms
  • (2S)-1-[(2R)-2-amino-3-phenylpropanoyl]-N-[(1S,2S)-1-(1,3-benzothiazol-2-yl)-5-(diaminomethylideneamino)-1-hydroxypentan-2-yl]pyrrolidine-2-carboxamide (PubChem)
  • (S)-1-((R)-2-Methylamino-3-phenyl-propionyl)-pyrrolidine-2-carboxylic acid [(S)-1-(benzothiazole-2-carbonyl)-4-guanidino-butyl]-amide (PubChem)
  • (S)-N-((S)-1-(benzo[d]thiazol-2-yl)-5-guanidino-1-oxopentan-2-yl)-1-((R)-2-(methylamino)-3-phenylpropanoyl)pyrrolidine-2-carboxamide (PubChem)
  • L-Prolinamide, N-methyl-D-phenylalanyl-N-[(1S)-4-[(aminoiminomethyl)amino]-1-(2-benzothiazolylcarbonyl)butyl]-(9CI) (Scifinder)
  • L-Prolinamide, N-methyl-D-phenylalanyl-N-[4-[(aminoiminomethyl)amino]-1-(2-benzothiazolylcarbonyl)butyl]-, (S)- (Scifinder)
  • RWJ 50353 (Scifinder)
  • RWJ-50353 (PDB)
Annotation
  • Function: Inhibitor of THROMBIN, EC: 3.4.21.5EC: Inhibitor of THROMBIN, EC: 3.4.21.5 / Info source: PubMed: 8913620
External info
Familypeptide-like serine protease inhibitor with central Proline residue

(S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclopentylamino)ethanoyl)pyrrolidine-2-carboxamide / (S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclohexylamino)ethanoyl)pyrrolidine-2-carboxamide / N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide ...(S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclopentylamino)ethanoyl)pyrrolidine-2-carboxamide / (S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclohexylamino)ethanoyl)pyrrolidine-2-carboxamide / N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide / N-cyclooctylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide / N-(3-chlorobenzyl)-1-(4-methylpentanoyl)-L-prolinamide / 1-[(2R)-2-aminobutanoyl]-N-(3-chlorobenzyl)-L-prolinamide / D-leucyl-N-(3-chlorobenzyl)-L-prolinamide / D-phenylalanyl-N-(3-chlorobenzyl)-L-prolinamide / 1-butanoyl-N-(4-carbamimidoylbenzyl)-L-prolinamide / N-(4-carbamimidoylbenzyl)-1-(4-methylpentanoyl)-L-prolinamide / N-(4-carbamimidoylbenzyl)-1-(3-phenylpropanoyl)-L-prolinamide / 1-[(2R)-2-aminobutanoyl]-N-(4-carbamimidoylbenzyl)-L-prolinamide / D-leucyl-N-(4-carbamimidoylbenzyl)-L-prolinamide / D-phenylalanyl-N-{4-[amino(iminio)methyl]benzyl}-L-prolinamide / beta-phenyl-D-phenylalanyl-N-(4-carbamimidoylbenzyl)-L-prolinamide / D-phenylalanyl-N-(3-fluorobenzyl)-L-prolinamide / (S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclopentyloxy)ethanoyl)pyrrolidine-2-carboxamide / (S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclohexyloxy)ethanoyl)pyrrolidine-2-carboxamide / (S)-N-(4-carbamimidoylbenzyl)-1-(3-cyclopentylpropanoyl)pyrrolidine-2-carboxamide / (S)-N-(4-carbamimidoylbenzyl)-1-(3-cyclohexylpropanoyl)pyrrolidine-2-carboxamide / D-phenylalanyl-N-(3-methylbenzyl)-L-prolinamide / D-phenylalanyl-N-benzyl-L-prolinamide / 3-cyclohexyl-D-alanyl-N-(3-chlorobenzyl)-L-prolinamide / N-acetyl-3-cyclohexyl-D-alanyl-N-(3-chlorobenzyl)-L-prolinamide / N-(carboxymethyl)-3-cyclohexyl-D-alanyl-N-({4-[(E)-amino(imino)methyl]-1,3-thiazol-2-yl}methyl)-L-prolinamide / N-(carboxymethyl)-3-cyclohexyl-D-alanyl-N-({5-[(E)-amino(imino)methyl]thien-2-yl}methyl)-L-prolinamide / 3-cyclohexyl-D-alanyl-L-prolyl-N~2~-methyl-L-arginine / D-PHENYLALANYL-N-[(1-METHYLPYRIDINIUM-3-YL)METHYL]-L-PROLINAMIDE / D-PHENYLALANYL-N-[(1-METHYLPYRIDINIUM-4-YL)METHYL]-L-PROLINAMIDE / D-PHENYLALANYL-N-[(4-CHLORO-1-METHYLPYRIDINIUM-3-YL)METHYL]-L-PROLINAMIDE / D-PHENYLALANYL-N-[(4-CHLORO-1-METHYLPYRIDINIUM-2-YL)METHYL]-L-PROLINAMIDE / D-PHENYLALANYL-N-(PYRIDIN-3-YLMETHYL)-L-PROLINAMIDE / D-PHENYLALANYL-N-[(4-CHLOROPYRIDIN-3-YL)METHYL]-L-PROLINAMIDE / D-PHENYLALANYL-N-[(4-CHLOROPYRIDIN-2-YL)METHYL]-L-PROLINAMIDE / D-PHENYLALANYL-N-(PYRIDIN-2-YLMETHYL)-L-PROLINAMIDE / D-PHENYLALANYL-N-(PYRIDIN-4-YLMETHYL)-L-PROLINAMIDE / D-PHENYLALANYL-N-[(1-METHYLPYRIDINIUM-2-YL)METHYL]-L-PROLINAMIDE / N-(METHYLSULFONYL)-D-PHENYLALANYL-N-[(1-CARBAMIMIDOYLPIPERIDIN-4-YL)METHYL]-L-PROLINAMIDE / RWJ-30353 / RWJ-51438

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Chemical information

Composition
Formula: C27H35N7O3S / Number of atoms: 73 / Formula weight: 537.677 / Formal charge: 0
Others

1tbz

DPN

PRO

THZ

Type: peptide-like / PDB classification: HETAIN / Three letter code: 00Q / Ideal coordinates details: Corina / Model coordinates PDB-ID: 1TBZ / Subcomponent: DPN, PRO, THZ
History
Create componentOct 28, 2010
Other modificationNov 15, 2010
Modify aromatic flagJun 4, 2011
Modify descriptorJun 4, 2011
Modify descriptorJan 5, 2012
Modify synonymsJun 5, 2020
External linksUniChem / ChemSpider / PubChem / ZINC / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 12.01O=C(N1CCCC1C(=O)NC(CCCNC(=[N@H])N)C(O)c2nc3ccccc3s2)C(N)Cc4ccccc4
CACTVS 3.385N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCCNC(N)=N)[CH](O)c3sc4ccccc4n3
OpenEye OEToolkits 1.7.5c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NC(CCCNC(=N)N)C(c3nc4ccccc4s3)O)N

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SMILES CANONICAL

CACTVS 3.385N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(N)=N)[C@H](O)c3sc4ccccc4n3
OpenEye OEToolkits 1.7.5[H]/N=C(\N)/NCCC[C@@H]([C@@H](c1nc2ccccc2s1)O)NC(=O)[C@@H]3CCCN3C(=O)[C@@H](Cc4ccccc4)N

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InChI

InChI 1.03InChI=1S/C27H35N7O3S/c28-18(16-17-8-2-1-3-9-17)26(37)34-15-7-12-21(34)24(36)32-20(11-6-14-31-27(29)30)23(35)25-33-19-10-4-5-13-22(19)38-25/h1-5,8-10,13,18,20-21,23,35H,6-7,11-12,14-16,28H2,(H,32,36)(H4,29,30,31)/t18-,20+,21+,23+/m1/s1

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InChIKey

InChI 1.03FOIAKHMJUJAMDU-ANZJIFDASA-N

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SYSTEMATIC NAME

ACDLabs 12.01D-phenylalanyl-N-[(1S,2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1-hydroxypentan-2-yl]-L-prolinamide
OpenEye OEToolkits 1.7.0(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]-N-[(1S,2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1-hydroxy-pentan-2-yl]pyrrolidine-2-carboxamide

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PDB entries

Showing all 1 items

PDB-1tbz:
HUMAN THROMBIN WITH ACTIVE SITE N-METHYL-D PHENYLALANYL-N-[5-(AMINOIMINOMETHYL)AMINO]-1-{{BENZOTHIAZOLYL)CARBONYL] BUTYL]-L-PROLINAMIDE TRIFLUROACETATE AND EXOSITE-HIRUGEN

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