Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Structural mechanisms of PRC1-mediated interplay between gene repression and activation
Journal, issue, pages	To Be Published
Publish date	May 27, 2025 (structure data deposition date)
Authors	Yu Y / Cai D / Zhang YZ / Huang J
External links	Search PubMed
Methods	EM (single particle)
Resolution	2.7 - 15.6 Å
Structure data	64804 9v6q EMDB-64804, PDB-9v6q: Cryo-EM structure of two cPRC1 complexes bound to opposite faces of an endogenous 147-bp mono-nucleosome Method: EM (single particle) / Resolution: 4.6 Å 64806 9v6s EMDB-64806, PDB-9v6s: Cryo-EM structure of a single cPRC1 complex engaged on one face of an endogenous 147-bp mononucleosome Method: EM (single particle) / Resolution: 3.0 Å 64809 9v6x EMDB-64809, PDB-9v6x: Cryo-EM structure of the cPRC1 complex bound to an endogenous 184-bp mono-nucleosome Method: EM (single particle) / Resolution: 4.0 Å EMDB-64836: Constituent EM map: Focused refinement of NCP_1 in the cPRC1-di-nucleosome(loose) complex. Method: EM (single particle) / Resolution: 3.6 Å EMDB-64840: Constituent EM map: Focused refinement of RNF2&BMI1 bounded NCP_1 in the cPRC1-di-nucleosome(loose) complex Method: EM (single particle) / Resolution: 4.1 Å EMDB-64841: Constituent EM map: Focused refinement of NCP_2 in the cPRC1-di-nucleosome (loose) complex Method: EM (single particle) / Resolution: 6.6 Å EMDB-64843: Low-resolution EM map of the cPRC1-di-nucleosome (loose) complex, used as a template for fitting high-resolution cPRC1-bound nucleosome density maps. Method: EM (single particle) / Resolution: 15.6 Å 64845 9v8l EMDB-64845, PDB-9v8l: Cryo-EM structure of the cPRC1-di-nucleosome (loose) complex Method: EM (single particle) / Resolution: 6.6 Å EMDB-64857: Constituent EM map: Focused refinement of NCP_1 in the cPRC1-di-nucleosome (tight) complex Method: EM (single particle) / Resolution: 3.2 Å EMDB-64860: Constituent EM map: Focused refinement of RNF2&BMI1 bounded NCP_1 in the cPRC1-di-nucleosome (tight) complex Method: EM (single particle) / Resolution: 3.7 Å EMDB-64863: Constituent EM map: Focused refinement of NCP_2 in the cPRC1-di-nucleosome (tight) complex Method: EM (single particle) / Resolution: 3.6 Å EMDB-64864: Constituent EM map: Focused refinement of RNF2&BMI1 bounded NCP_2 in the cPRC1-di-nucleosome (tight) complex Method: EM (single particle) / Resolution: 4.5 Å EMDB-64867: Low-resolution EM map of the cPRC1-di-nucleosome (tight) complex, used as a template for fitting high-resolution cPRC1-bound nucleosome density maps Method: EM (single particle) / Resolution: 6.9 Å 64872 9v9h EMDB-64872, PDB-9v9h: Cryo-EM structure of the cPRC1-di-nucleosome (tight) complex Method: EM (single particle) / Resolution: 4.5 Å EMDB-64878: Constituent EM map: Focused refinement of NCP_1 in the cPRC1-di-nucleosome (CBX7) complex Method: EM (single particle) / Resolution: 2.7 Å EMDB-64879: Constituent EM map: Focused refinement of RNF2&BMI1 bounded NCP_1 in the cPRC1-di-nucleosome (CBX7) complex Method: EM (single particle) / Resolution: 3.2 Å EMDB-64880: Constituent EM map: Focused refinement of NCP_2 in the cPRC1-di-nucleosome (CBX7) complex Method: EM (single particle) / Resolution: 2.9 Å EMDB-64881: Constituent EM map: Focused refinement of RNF2&BMI1 bounded NCP_2 in the cPRC1-di-nucleosome (CBX7) complex Method: EM (single particle) / Resolution: 3.4 Å EMDB-64882: Low-resolution EM map of the cPRC1-di-nucleosome (CBX7) complex, used as a template for fitting high-resolution cPRC1-bound nucleosome density maps Method: EM (single particle) / Resolution: 3.5 Å 64883 9v9p EMDB-64883, PDB-9v9p: Cryo-EM structure of the cPRC1-di-nucleosome (CBX7) complex Method: EM (single particle) / Resolution: 3.4 Å 64884 9v9q EMDB-64884, PDB-9v9q: Cryo-EM structure of the cPRC1-UbcH5c E3-E2 complex bound to the H2BK120ub-modified nucleosome Method: EM (single particle) / Resolution: 2.8 Å 64885 9v9r EMDB-64885, PDB-9v9r: Cryo-EM structure of the ncPRC1.1-UbcH5c E3-E2 complex bound to the H2BK120ub-modified nucleosome Method: EM (single particle) / Resolution: 3.2 Å 64886 9v9s EMDB-64886, PDB-9v9s: Cryo-EM structure of the ncPRC1.1 complex bound to the H2AK119ubH2BK120ub-modified nucleosome Method: EM (single particle) / Resolution: 3.8 Å 64887 9v9t EMDB-64887, PDB-9v9t: Cryo-EM structure of the ncPRC1.6 complex bound to the H2AK119ubH2BK120ub-modified nucleosome Method: EM (single particle) / Resolution: 2.9 Å 64888 9v9u EMDB-64888, PDB-9v9u: Cryo-EM structure of the ncPRC1.4 complex containing two RNF2-BMI1 bound to the H2AK119ubH2BK120ub-modified nucleosome Method: EM (single particle) / Resolution: 3.7 Å 64889 9v9v EMDB-64889, PDB-9v9v: Cryo-EM structure of the ncPRC1.4 complex containing one RNF2-BMI1 and one RYBP bound to the H2AK119ubH2BK120ub-modified nucleosome Method: EM (single particle) / Resolution: 3.8 Å 64890 9v9w EMDB-64890, PDB-9v9w: Cryo-EM structure of the ncPRC1.4 complex containing two RYBP bound to the H2AK119ub-modified nucleosome Method: EM (single particle) / Resolution: 3.0 Å 64891 9v9x EMDB-64891, PDB-9v9x: Cryo-EM structure of the ncPRC1.4 complex containing one RNF2-BMI1 bound to the H2AK119ub-modified nucleosome Method: EM (single particle) / Resolution: 3.3 Å 64892 9v9y EMDB-64892, PDB-9v9y: Cryo-EM structure of the ncPRC1.4 complex containing one RNF2-BMI1 and one RYBP bound to the H2AK119ub-modified nucleosome Method: EM (single particle) / Resolution: 3.2 Å 64893 9v9z EMDB-64893, PDB-9v9z: Cryo-EM structure of the ncPRC1.4 complex containing one RYBP bound to the H2AK119ub-modified nucleosome Method: EM (single particle) / Resolution: 3.0 Å
Chemicals	ChemComp-ZN: Unknown entry
Source	homo sapiens (human) xenopus laevis (African clawed frog)
Keywords	GENE REGULATION / histone modification / transcriptional regulation / nucleosome modification / GENE REGULATION/DNA / GENE REGULATION-DNA complex