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Structure paper

TitleThe role of Akkermansia muciniphila sulfatases in colonic mucin utilisation
Journal, issue, pagesTo Be Published
Publish dateAug 5, 2025 (structure data deposition date)
AuthorsDey, D. / Salman, N.D. / Tomlinson, C.W.E. / Gugel, S. / Chunsheng, J. / Raba, G. / Nilsson, M. / McIver, Z. / Simpkin, A. / Davy, M. ...Dey, D. / Salman, N.D. / Tomlinson, C.W.E. / Gugel, S. / Chunsheng, J. / Raba, G. / Nilsson, M. / McIver, Z. / Simpkin, A. / Davy, M. / Rigden, D.J. / Czjzek, M. / Byrne, D.P. / Case, A. / Baumann, C. / Wright, G.S.A. / van der Post, S. / Martens, E.C. / Yates, E.A. / Davey, L. / Luis, A.S. / Cartmell, A.
External linksSearch PubMed
MethodsX-ray diffraction
Resolution1.38 - 2.9 Å
Structure data

PDB-9s7x:
Amuc0121_S1_15 in complex with D-Galactose
Method: X-RAY DIFFRACTION / Resolution: 1.56 Å

PDB-9s85:
Amuc0121_S1_15 in complex with O6 sulfated D-Galactose
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-9s88:
Amuc0121_S1_15 in complex with O6 sulfated Lewis A antigen (6'S-LeA)
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

PDB-9s8a:
Amuc0451_S1_20
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-9s8f:
Amuc1755_S1_16 in complex with D-Galactose
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-9s8x:
Amuc0953_S1_20 in complex with D-Galactose
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-9s8y:
Amuc1074_S1_11 in complex with N-acetyl D-glucosamine
Method: X-RAY DIFFRACTION / Resolution: 1.38 Å

PDB-9sf6:
Amuc0953 N-terminal domain
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-GAL:
beta-D-galactopyranose

ChemComp-FWN:
2-[2-(2-ethoxyethoxy)ethoxy]ethanol

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-G6S:
6-O-sulfo-beta-D-galactopyranose

ChemComp-IOD:
IODIDE ION

ChemComp-BR:
BROMIDE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PO4:
PHOSPHATE ION

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-NDG:
2-acetamido-2-deoxy-alpha-D-glucopyranose

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-ETE:
2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL

ChemComp-NA:
Unknown entry

ChemComp-SO4:
SULFATE ION

Source
  • akkermansia muciniphila atcc baa-835 (bacteria)
KeywordsHYDROLASE / Carbohydrate sulfatase / mucin / Akkermansia muciniphila / Sulfation / SUGAR BINDING PROTEIN / Carbohydrate binding module

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